GTF & FPKM expr file

[indran...@gmail.com]

Hello,

I am trying to map lncRNA from gtf file to their expression in fpkm file which I have downloaded from your website. But I didn't find any overlap based on transcript IDs
between these 2 files. I am sure, I may not be looking at the correct location. Can you please guide, I want to select only lncRNAs from gtf file and get their expression from fpkm expr file.

Thanks in advance,
Indrani

[Yashar Niknafs]

Hello,

In the GTF file, there is an attribute "transcript_id" that will match up with the identifier in column one of the expression file. 

Let me know if this helps!

-Yashar