Hi Alexander,
I think I see where you are coming from now, but you'll have to pardon my ignorance since I haven't studied latent class models in any kind of depth, especially with regards to their connection to IRT estimation techniques (on the todo list, along with a laundry list of others). References are certainly welcome!
That being said, you don't need to use the empiricalhist inputs if you are planning to supply your own customTheta and customPriorFun to generate those models. Instead, if you want the final prior estimate just use the global resolution operator <<- in the customPriorFun to obtain the estimates in your workspace and inspect those directly. These also shouldn't be limited to unidimensional models, but they will be if the empiricalhist trigger is set to TRUE (which I think is pretty safe for now).
By the way, if you do manage to construct something latent class-like using these inputs would you mind posting it here/sending it to me directly? Would help me get a better idea of what exactly it is you are try to accomplish, and might be something worth including into the package at a later time. Cheers.
Phil