Reduction in size of 25_04

[Daniel Esteban Palma Igor]

Hi, I have noted that there is a considerable reduction in the number of sequences in the version 25_04 but an increase in the number of species compared to previous releases, have you change your filtering process? It may be a good idea to document this type of changes somewhere.

Regards,

Daniel Palma

[‍이재윤((서울)교육지원팀)]

I have the same question.

2025년 5월 16일 금요일 오전 4시 43분 6초 UTC+9에 Daniel Esteban Palma Igor님이 작성:

[Antonio Muñoz Mérida]

In the last versions of MIMt we applied an extra filter to remove all sequences identical (100% of identity), total or partially, that means that if a sequence is shorter but identical to another one that is longer, we keep the longer one and in the side file _redundancy.txt we put the ID of the sequence that remains, and the species that it represents, in this case both of them, the longer (that remains in the database) and the shorter belonging to a different species.

Best regards