Install milk under user mode failed, Linux and Windows environment

[Furong Peng]

Hi 

I tried to use easy_install milk and get following error:

Linux Environment:

<

easy_install milk

Searching for milk

Reading http://pypi.python.org/simple/milk/

Best match: milk 0.5.3

Downloading https://pypi.python.org/packages/source/m/milk/milk-0.5.3.tar.gz#md5=e0b7db663b29f050fb47bb49eb8d7411

Processing milk-0.5.3.tar.gz

Running milk-0.5.3/setup.py -q bdist_egg --dist-dir /tmp/easy_install-kyqpRI/milk-0.5.3/egg-dist-tmp-_8PYZn

error: SandboxViolation: open('/dev/null', 'w') {}

The package setup script has attempted to modify files on your system

that are not within the EasyInstall build area, and has been aborted.

This package cannot be safely installed by EasyInstall, and may not

support alternate installation locations even if you run its setup

script by hand.  Please inform the package's author and the EasyInstall

maintainers to find out if a fix or workaround is available.

>

windows Environment;

easy_install.exe milk

Searching for milk

Reading http://pypi.python.org/simple/milk/

Best match: milk 0.5.3

Downloading https://pypi.python.org/packages/source/m/milk/milk-0.5.3.tar.gz#md5=e0b7db663b29f050fb47bb49eb8d7411

Processing milk-0.5.3.tar.gz

Running milk-0.5.3\setup.py -q bdist_egg --dist-dir c:\users\117238\appdata\local\temp\easy_install-lpwfdj\milk-0.5.3\egg-dist-tmp-f8drdb

Missing compiler_cxx fix for MSVCCompiler

Found executable C:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\BIN\amd64\cl.exe

Found executable C:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\BIN\amd64\link.exe

cl : Command line warning D9002 : ignoring unknown option '-std=c++0x'

_lasso.cpp

C:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\xlocale(342) : warning C4530: C++ exception handler used, but unwind semantics are not enabled. Specify /EHsc

milk/supervised/_lasso.cpp(7) : fatal error C1083: Cannot open include file: 'random': No such file or directory

error: Setup script exited with error: Command "C:\Program Files (x86)\Microsoft

 Visual Studio 9.0\VC\BIN\amd64\cl.exe /c /nologo /Ox /MD /W3 /GS- /DNDEBUG -IC:

\Python27\lib\site-packages\numpy\core\include -IC:\Python27\include -IC:\Python

27\PC /Tpmilk/supervised/_lasso.cpp /Fobuild\temp.win-amd64-2.7\Release\milk/sup

ervised/_lasso.obj -std=c++0x /Zm1000 /Zm1000" failed with exit status 2

C:\Python27\lib\site-packages\numpy\distutils\misc_util.py:252: RuntimeWarning:

Parent module 'numpy.distutils' not found while handling absolute import

  from numpy.distutils import log

[Luis Pedro Coelho]

Hi,

For Windows, I recommend you try one of these pre-built binary packages:

http://www.lfd.uci.edu/~gohlke/pythonlibs/#milk

For Linux, I don't really understand the error. You may want to download
the package source directly from:

https://pypi.python.org/packages/source/m/milk/milk-0.5.3.tar.gz

unpack it, and run "python setup.py install" inside milk-0.5.3

HTH
Luis
--
Luis Pedro Coelho | EMBL | http://luispedro.org

Recent stuff:
http://dx.doi.org/10.5334/jors.ac
http://bit.ly/coelho2013-video
http://bit.ly/general-subcellular-determination

On 08/20/2013 03:55 AM, Furong Peng wrote:
> Hi
> I tried to use easy_install milk and get following error:
>

> *Linux Environment:*

> <
> easy_install milk
> Searching for milk
> Reading http://pypi.python.org/simple/milk/
> Best match: milk 0.5.3
> Downloading
> https://pypi.python.org/packages/source/m/milk/milk-0.5.3.tar.gz#md5=e0b7db663b29f050fb47bb49eb8d7411
> Processing milk-0.5.3.tar.gz
> Running milk-0.5.3/setup.py -q bdist_egg --dist-dir
> /tmp/easy_install-kyqpRI/milk-0.5.3/egg-dist-tmp-_8PYZn
> error: SandboxViolation: open('/dev/null', 'w') {}
>
> The package setup script has attempted to modify files on your system
> that are not within the EasyInstall build area, and has been aborted.
>
> This package cannot be safely installed by EasyInstall, and may not
> support alternate installation locations even if you run its setup
> script by hand. Please inform the package's author and the EasyInstall
> maintainers to find out if a fix or workaround is available.
> >
>
>

> *windows Environment;*

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[Furong Peng]

Hi Luis,

Thanks for your reply.

On the linux, it can be installed by source.  My problem may be due to easy_install.

The windows pre-built package should work for me.  I will send a request to my IT service for software installation.

Cheers,

Furong