Re: Build errors on OSX 10.9 (Mavericks)
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Luis Pedro Coelho
Nov 17, 2013, 7:45:00 AM11/17/13
to milk-...@googlegroups.com
Hi,
Sorry, these Mac OSX issues always stump me. It's a finicky system to
develop for and I cannot keep up with all the details of different
versions &c.
If anybody has a fix, I'd love to incorporate into the official milk
versions.
Tx
Luis
On 11/17/2013 09:37 AM, dav...@softintel.com wrote:
> Hi,
>
> Any idea why I'm getting compilation errors on OSX 10.9 with the
> Anaconda distribution of Python 2.7?
>
> Thanks in advance,
> -Dave
>
> sudo conda install milk
> Conda package not available for milk, attempting to install via pip
> Downloading/unpacking milk
> Running setup.py egg_info for package milk
> build_src
> building extension "milk.supervised._perceptron" sources
> building extension "milk.supervised._lasso" sources
> building extension "milk.unsupervised._kmeans" sources
> building extension "milk.supervised._tree" sources
> building extension "milk.unsupervised._som" sources
> building extension "milk.supervised._svm" sources
> build_src: building npy-pkg config files
>
> Installing collected packages: milk
> Running setup.py install for milk
> unifing config_cc, config, build_clib, build_ext, build commands
> --compiler options
> unifing config_fc, config, build_clib, build_ext, build commands
> --fcompiler options
> build_src
> building extension "milk.supervised._perceptron" sources
> building extension "milk.supervised._lasso" sources
> building extension "milk.unsupervised._kmeans" sources
> building extension "milk.supervised._tree" sources
> building extension "milk.unsupervised._som" sources
> building extension "milk.supervised._svm" sources
> build_src: building npy-pkg config files
> customize UnixCCompiler
> customize UnixCCompiler using build_ext
> customize UnixCCompiler
> customize UnixCCompiler using build_ext
> building 'milk.supervised._perceptron' extension
> compiling C++ sources
> C compiler: g++ -fno-strict-aliasing
> -I/Users/davidlaxer/anaconda/include -arch x86_64 -isysroot
> /Developer/SDKs/MacOSX10.5.sdk -DNDEBUG -g -fwrapv -O3 -Wall
>
> compile options:
> '-I/Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include
> -I/Users/davidlaxer/anaconda/include/python2.7 -c'
> extra options: '-std=c++0x -stdlib=libc++'
> g++: milk/supervised/_perceptron.cpp
> In file included from milk/supervised/_perceptron.cpp:4:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/iostream:40:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/istream:156:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/ostream:132:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/locale:187:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cstdlib:86:
> In file included from
> /Developer/SDKs/MacOSX10.5.sdk/usr/include/stdlib.h:61:
> /Developer/SDKs/MacOSX10.5.sdk/usr/include/available.h:111:6:
> error: __MAC_OS_X_VERSION_MAX_ALLOWED must be >=
> __MAC_OS_X_VERSION_MIN_REQUIRED
> #error __MAC_OS_X_VERSION_MAX_ALLOWED must be >=
> __MAC_OS_X_VERSION_MIN_REQUIRED
> ^
> In file included from milk/supervised/_perceptron.cpp:6:
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1339:9:
> error: no member named 'llrint' in the global namespace
> using ::llrint;
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1340:9:
> error: no member named 'llrintf' in the global namespace
> using ::llrintf;
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1342:86:
> error: use of undeclared identifier 'llrintf'
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(float __x)
> _NOEXCEPT {return llrintf(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1343:86:
> error: use of undeclared identifier 'llrintl'
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(long double __x)
> _NOEXCEPT {return llrintl(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1348:35:
> error: call to 'llrint' is ambiguous
> llrint(_A1 __x) _NOEXCEPT {return llrint((double)__x);}
> ^~~~~~
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1342:44:
> note: candidate function
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(float __x)
> _NOEXCEPT {return llrintf(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1343:44:
> note: candidate function
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(long double __x)
> _NOEXCEPT {return llrintl(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1352:9:
> error: no member named 'llround' in the global namespace
> using ::llround;
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1353:9:
> error: no member named 'llroundf' in the global namespace
> using ::llroundf;
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1355:87:
> error: use of undeclared identifier 'llroundf'
> inline _LIBCPP_INLINE_VISIBILITY long long llround(float __x)
> _NOEXCEPT {return llroundf(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1356:87:
> error: use of undeclared identifier 'llroundl'
> inline _LIBCPP_INLINE_VISIBILITY long long llround(long double __x)
> _NOEXCEPT {return llroundl(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1361:36:
> error: call to 'llround' is ambiguous
> llround(_A1 __x) _NOEXCEPT {return llround((double)__x);}
> ^~~~~~~
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1355:44:
> note: candidate function
> inline _LIBCPP_INLINE_VISIBILITY long long llround(float __x)
> _NOEXCEPT {return llroundf(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1356:44:
> note: candidate function
> inline _LIBCPP_INLINE_VISIBILITY long long llround(long double __x)
> _NOEXCEPT {return llroundl(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1655:9:
> error: no member named 'llrintl' in the global namespace
> using ::llrintl;
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1656:9:
> error: no member named 'llroundl' in the global namespace
> using ::llroundl;
> ~~^
> In file included from milk/supervised/_perceptron.cpp:10:
> In file included from
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
> In file included from
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728:
>
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2:
> warning: "Using deprecated NumPy API, disable it by #defining
> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
> #warning "Using deprecated NumPy API, disable it by #defining
> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
> ^
> 1 warning and 13 errors generated.
> In file included from milk/supervised/_perceptron.cpp:4:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/iostream:40:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/istream:156:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/ostream:132:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/locale:187:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cstdlib:86:
> In file included from
> /Developer/SDKs/MacOSX10.5.sdk/usr/include/stdlib.h:61:
> /Developer/SDKs/MacOSX10.5.sdk/usr/include/available.h:111:6:
> error: __MAC_OS_X_VERSION_MAX_ALLOWED must be >=
> __MAC_OS_X_VERSION_MIN_REQUIRED
> #error __MAC_OS_X_VERSION_MAX_ALLOWED must be >=
> __MAC_OS_X_VERSION_MIN_REQUIRED
> ^
> In file included from milk/supervised/_perceptron.cpp:6:
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1339:9:
> error: no member named 'llrint' in the global namespace
> using ::llrint;
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1340:9:
> error: no member named 'llrintf' in the global namespace
> using ::llrintf;
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1342:86:
> error: use of undeclared identifier 'llrintf'
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(float __x)
> _NOEXCEPT {return llrintf(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1343:86:
> error: use of undeclared identifier 'llrintl'
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(long double __x)
> _NOEXCEPT {return llrintl(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1348:35:
> error: call to 'llrint' is ambiguous
> llrint(_A1 __x) _NOEXCEPT {return llrint((double)__x);}
> ^~~~~~
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1342:44:
> note: candidate function
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(float __x)
> _NOEXCEPT {return llrintf(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1343:44:
> note: candidate function
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(long double __x)
> _NOEXCEPT {return llrintl(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1352:9:
> error: no member named 'llround' in the global namespace
> using ::llround;
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1353:9:
> error: no member named 'llroundf' in the global namespace
> using ::llroundf;
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1355:87:
> error: use of undeclared identifier 'llroundf'
> inline _LIBCPP_INLINE_VISIBILITY long long llround(float __x)
> _NOEXCEPT {return llroundf(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1356:87:
> error: use of undeclared identifier 'llroundl'
> inline _LIBCPP_INLINE_VISIBILITY long long llround(long double __x)
> _NOEXCEPT {return llroundl(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1361:36:
> error: call to 'llround' is ambiguous
> llround(_A1 __x) _NOEXCEPT {return llround((double)__x);}
> ^~~~~~~
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1355:44:
> note: candidate function
> inline _LIBCPP_INLINE_VISIBILITY long long llround(float __x)
> _NOEXCEPT {return llroundf(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1356:44:
> note: candidate function
> inline _LIBCPP_INLINE_VISIBILITY long long llround(long double __x)
> _NOEXCEPT {return llroundl(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1655:9:
> error: no member named 'llrintl' in the global namespace
> using ::llrintl;
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1656:9:
> error: no member named 'llroundl' in the global namespace
> using ::llroundl;
> ~~^
> In file included from milk/supervised/_perceptron.cpp:10:
> In file included from
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
> In file included from
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728:
>
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2:
> warning: "Using deprecated NumPy API, disable it by #defining
> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
> #warning "Using deprecated NumPy API, disable it by #defining
> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
> ^
> 1 warning and 13 errors generated.
> error: Command "g++ -fno-strict-aliasing
> -I/Users/davidlaxer/anaconda/include -arch x86_64 -isysroot
> /Developer/SDKs/MacOSX10.5.sdk -DNDEBUG -g -fwrapv -O3 -Wall
> -I/Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include
> -I/Users/davidlaxer/anaconda/include/python2.7 -c
> milk/supervised/_perceptron.cpp -o
> build/temp.macosx-10.5-x86_64-2.7/milk/supervised/_perceptron.o
> -std=c++0x -stdlib=libc++" failed with exit status 1
> Complete output from command /Users/davidlaxer/anaconda/bin/python
> -c "import
> setuptools;__file__='/tmp/pip-build/milk/setup.py';exec(compile(open(__file__).read().replace('\r\n',
> '\n'), __file__, 'exec'))" install --record
> /tmp/pip-tTc3Y_-record/install-record.txt
> --single-version-externally-managed:
> running install
>
> running build
>
> running config_cc
>
> unifing config_cc, config, build_clib, build_ext, build commands
> --compiler options
>
> running config_fc
>
> unifing config_fc, config, build_clib, build_ext, build commands
> --fcompiler options
>
> running build_src
>
> build_src
>
> building extension "milk.supervised._perceptron" sources
>
> building extension "milk.supervised._lasso" sources
>
> building extension "milk.unsupervised._kmeans" sources
>
> building extension "milk.supervised._tree" sources
>
> building extension "milk.unsupervised._som" sources
>
> building extension "milk.supervised._svm" sources
>
> build_src: building npy-pkg config files
>
> running build_py
>
> running build_ext
>
> customize UnixCCompiler
>
> customize UnixCCompiler using build_ext
>
> customize UnixCCompiler
>
> customize UnixCCompiler using build_ext
>
> building 'milk.supervised._perceptron' extension
>
> compiling C++ sources
>
> C compiler: g++ -fno-strict-aliasing
> -I/Users/davidlaxer/anaconda/include -arch x86_64 -isysroot
> /Developer/SDKs/MacOSX10.5.sdk -DNDEBUG -g -fwrapv -O3 -Wall
>
>
>
> compile options:
> '-I/Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include
> -I/Users/davidlaxer/anaconda/include/python2.7 -c'
>
> extra options: '-std=c++0x -stdlib=libc++'
>
> g++: milk/supervised/_perceptron.cpp
>
> In file included from milk/supervised/_perceptron.cpp:4:
>
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/iostream:40:
>
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/istream:156:
>
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/ostream:132:
>
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/locale:187:
>
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cstdlib:86:
>
> In file included from
> /Developer/SDKs/MacOSX10.5.sdk/usr/include/stdlib.h:61:
>
> /Developer/SDKs/MacOSX10.5.sdk/usr/include/available.h:111:6: error:
> __MAC_OS_X_VERSION_MAX_ALLOWED must be >= __MAC_OS_X_VERSION_MIN_REQUIRED
>
> #error __MAC_OS_X_VERSION_MAX_ALLOWED must be >=
> __MAC_OS_X_VERSION_MIN_REQUIRED
>
> ^
>
> In file included from milk/supervised/_perceptron.cpp:6:
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1339:9:
> error: no member named 'llrint' in the global namespace
>
> using ::llrint;
>
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1340:9:
> error: no member named 'llrintf' in the global namespace
>
> using ::llrintf;
>
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1342:86:
> error: use of undeclared identifier 'llrintf'
>
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(float __x)
> _NOEXCEPT {return llrintf(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1343:86:
> error: use of undeclared identifier 'llrintl'
>
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(long double __x)
> _NOEXCEPT {return llrintl(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1348:35:
> error: call to 'llrint' is ambiguous
>
> llrint(_A1 __x) _NOEXCEPT {return llrint((double)__x);}
>
> ^~~~~~
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1342:44:
> note: candidate function
>
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(float __x)
> _NOEXCEPT {return llrintf(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1343:44:
> note: candidate function
>
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(long double __x)
> _NOEXCEPT {return llrintl(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1352:9:
> error: no member named 'llround' in the global namespace
>
> using ::llround;
>
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1353:9:
> error: no member named 'llroundf' in the global namespace
>
> using ::llroundf;
>
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1355:87:
> error: use of undeclared identifier 'llroundf'
>
> inline _LIBCPP_INLINE_VISIBILITY long long llround(float __x)
> _NOEXCEPT {return llroundf(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1356:87:
> error: use of undeclared identifier 'llroundl'
>
> inline _LIBCPP_INLINE_VISIBILITY long long llround(long double __x)
> _NOEXCEPT {return llroundl(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1361:36:
> error: call to 'llround' is ambiguous
>
> llround(_A1 __x) _NOEXCEPT {return llround((double)__x);}
>
> ^~~~~~~
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1355:44:
> note: candidate function
>
> inline _LIBCPP_INLINE_VISIBILITY long long llround(float __x)
> _NOEXCEPT {return llroundf(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1356:44:
> note: candidate function
>
> inline _LIBCPP_INLINE_VISIBILITY long long llround(long double __x)
> _NOEXCEPT {return llroundl(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1655:9:
> error: no member named 'llrintl' in the global namespace
>
> using ::llrintl;
>
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1656:9:
> error: no member named 'llroundl' in the global namespace
>
> using ::llroundl;
>
> ~~^
>
> In file included from milk/supervised/_perceptron.cpp:10:
>
> In file included from
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
>
> In file included from
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728:
>
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2:
> warning: "Using deprecated NumPy API, disable it by #defining
> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
>
> #warning "Using deprecated NumPy API, disable it by #defining
> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
>
> ^
>
> 1 warning and 13 errors generated.
>
> In file included from milk/supervised/_perceptron.cpp:4:
>
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/iostream:40:
>
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/istream:156:
>
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/ostream:132:
>
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/locale:187:
>
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cstdlib:86:
>
> In file included from
> /Developer/SDKs/MacOSX10.5.sdk/usr/include/stdlib.h:61:
>
> /Developer/SDKs/MacOSX10.5.sdk/usr/include/available.h:111:6: error:
> __MAC_OS_X_VERSION_MAX_ALLOWED must be >= __MAC_OS_X_VERSION_MIN_REQUIRED
>
> #error __MAC_OS_X_VERSION_MAX_ALLOWED must be >=
> __MAC_OS_X_VERSION_MIN_REQUIRED
>
> ^
>
> In file included from milk/supervised/_perceptron.cpp:6:
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1339:9:
> error: no member named 'llrint' in the global namespace
>
> using ::llrint;
>
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1340:9:
> error: no member named 'llrintf' in the global namespace
>
> using ::llrintf;
>
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1342:86:
> error: use of undeclared identifier 'llrintf'
>
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(float __x)
> _NOEXCEPT {return llrintf(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1343:86:
> error: use of undeclared identifier 'llrintl'
>
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(long double __x)
> _NOEXCEPT {return llrintl(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1348:35:
> error: call to 'llrint' is ambiguous
>
> llrint(_A1 __x) _NOEXCEPT {return llrint((double)__x);}
>
> ^~~~~~
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1342:44:
> note: candidate function
>
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(float __x)
> _NOEXCEPT {return llrintf(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1343:44:
> note: candidate function
>
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(long double __x)
> _NOEXCEPT {return llrintl(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1352:9:
> error: no member named 'llround' in the global namespace
>
> using ::llround;
>
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1353:9:
> error: no member named 'llroundf' in the global namespace
>
> using ::llroundf;
>
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1355:87:
> error: use of undeclared identifier 'llroundf'
>
> inline _LIBCPP_INLINE_VISIBILITY long long llround(float __x)
> _NOEXCEPT {return llroundf(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1356:87:
> error: use of undeclared identifier 'llroundl'
>
> inline _LIBCPP_INLINE_VISIBILITY long long llround(long double __x)
> _NOEXCEPT {return llroundl(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1361:36:
> error: call to 'llround' is ambiguous
>
> llround(_A1 __x) _NOEXCEPT {return llround((double)__x);}
>
> ^~~~~~~
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1355:44:
> note: candidate function
>
> inline _LIBCPP_INLINE_VISIBILITY long long llround(float __x)
> _NOEXCEPT {return llroundf(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1356:44:
> note: candidate function
>
> inline _LIBCPP_INLINE_VISIBILITY long long llround(long double __x)
> _NOEXCEPT {return llroundl(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1655:9:
> error: no member named 'llrintl' in the global namespace
>
> using ::llrintl;
>
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1656:9:
> error: no member named 'llroundl' in the global namespace
>
> using ::llroundl;
>
> ~~^
>
> In file included from milk/supervised/_perceptron.cpp:10:
>
> In file included from
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
>
> In file included from
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728:
>
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2:
> warning: "Using deprecated NumPy API, disable it by #defining
> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
>
> #warning "Using deprecated NumPy API, disable it by #defining
> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
>
> ^
>
> 1 warning and 13 errors generated.
>
> error: Command "g++ -fno-strict-aliasing
> -I/Users/davidlaxer/anaconda/include -arch x86_64 -isysroot
> /Developer/SDKs/MacOSX10.5.sdk -DNDEBUG -g -fwrapv -O3 -Wall
> -I/Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include
> -I/Users/davidlaxer/anaconda/include/python2.7 -c
> milk/supervised/_perceptron.cpp -o
> build/temp.macosx-10.5-x86_64-2.7/milk/supervised/_perceptron.o
> -std=c++0x -stdlib=libc++" failed with exit status 1
>
> ----------------------------------------
> Command /Users/davidlaxer/anaconda/bin/python -c "import
> setuptools;__file__='/tmp/pip-build/milk/setup.py';exec(compile(open(__file__).read().replace('\r\n',
> '\n'), __file__, 'exec'))" install --record
> /tmp/pip-tTc3Y_-record/install-record.txt
> --single-version-externally-managed failed with error code 1 in
> /tmp/pip-build/milk
> Storing complete log in /Users/davidlaxer/.pip/pip.log
> Could not install 'milk' using pip
>
>
> --
> You received this message because you are subscribed to the Google
> Groups "milk users" group.
> To unsubscribe from this group and stop receiving emails from it, send
> an email to milk-users+...@googlegroups.com.
> For more options, visit https://groups.google.com/groups/opt_out.
--
Luis Pedro Coelho | EMBL | http://luispedro.org
Recent stuff:
http://dx.doi.org/10.5334/jors.ac
http://bit.ly/coelho2013-video
http://bit.ly/general-subcellular-determination
Sorry, these Mac OSX issues always stump me. It's a finicky system to
develop for and I cannot keep up with all the details of different
versions &c.
If anybody has a fix, I'd love to incorporate into the official milk
versions.
Tx
Luis
On 11/17/2013 09:37 AM, dav...@softintel.com wrote:
> Hi,
>
> Any idea why I'm getting compilation errors on OSX 10.9 with the
> Anaconda distribution of Python 2.7?
>
> Thanks in advance,
> -Dave
>
> sudo conda install milk
> Conda package not available for milk, attempting to install via pip
> Downloading/unpacking milk
> Running setup.py egg_info for package milk
> build_src
> building extension "milk.supervised._perceptron" sources
> building extension "milk.supervised._lasso" sources
> building extension "milk.unsupervised._kmeans" sources
> building extension "milk.supervised._tree" sources
> building extension "milk.unsupervised._som" sources
> building extension "milk.supervised._svm" sources
> build_src: building npy-pkg config files
>
> Installing collected packages: milk
> Running setup.py install for milk
> unifing config_cc, config, build_clib, build_ext, build commands
> --compiler options
> unifing config_fc, config, build_clib, build_ext, build commands
> --fcompiler options
> build_src
> building extension "milk.supervised._perceptron" sources
> building extension "milk.supervised._lasso" sources
> building extension "milk.unsupervised._kmeans" sources
> building extension "milk.supervised._tree" sources
> building extension "milk.unsupervised._som" sources
> building extension "milk.supervised._svm" sources
> build_src: building npy-pkg config files
> customize UnixCCompiler
> customize UnixCCompiler using build_ext
> customize UnixCCompiler
> customize UnixCCompiler using build_ext
> building 'milk.supervised._perceptron' extension
> compiling C++ sources
> C compiler: g++ -fno-strict-aliasing
> -I/Users/davidlaxer/anaconda/include -arch x86_64 -isysroot
> /Developer/SDKs/MacOSX10.5.sdk -DNDEBUG -g -fwrapv -O3 -Wall
>
> compile options:
> '-I/Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include
> -I/Users/davidlaxer/anaconda/include/python2.7 -c'
> extra options: '-std=c++0x -stdlib=libc++'
> g++: milk/supervised/_perceptron.cpp
> In file included from milk/supervised/_perceptron.cpp:4:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/iostream:40:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/istream:156:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/ostream:132:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/locale:187:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cstdlib:86:
> In file included from
> /Developer/SDKs/MacOSX10.5.sdk/usr/include/stdlib.h:61:
> /Developer/SDKs/MacOSX10.5.sdk/usr/include/available.h:111:6:
> error: __MAC_OS_X_VERSION_MAX_ALLOWED must be >=
> __MAC_OS_X_VERSION_MIN_REQUIRED
> #error __MAC_OS_X_VERSION_MAX_ALLOWED must be >=
> __MAC_OS_X_VERSION_MIN_REQUIRED
> ^
> In file included from milk/supervised/_perceptron.cpp:6:
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1339:9:
> error: no member named 'llrint' in the global namespace
> using ::llrint;
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1340:9:
> error: no member named 'llrintf' in the global namespace
> using ::llrintf;
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1342:86:
> error: use of undeclared identifier 'llrintf'
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(float __x)
> _NOEXCEPT {return llrintf(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1343:86:
> error: use of undeclared identifier 'llrintl'
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(long double __x)
> _NOEXCEPT {return llrintl(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1348:35:
> error: call to 'llrint' is ambiguous
> llrint(_A1 __x) _NOEXCEPT {return llrint((double)__x);}
> ^~~~~~
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1342:44:
> note: candidate function
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(float __x)
> _NOEXCEPT {return llrintf(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1343:44:
> note: candidate function
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(long double __x)
> _NOEXCEPT {return llrintl(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1352:9:
> error: no member named 'llround' in the global namespace
> using ::llround;
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1353:9:
> error: no member named 'llroundf' in the global namespace
> using ::llroundf;
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1355:87:
> error: use of undeclared identifier 'llroundf'
> inline _LIBCPP_INLINE_VISIBILITY long long llround(float __x)
> _NOEXCEPT {return llroundf(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1356:87:
> error: use of undeclared identifier 'llroundl'
> inline _LIBCPP_INLINE_VISIBILITY long long llround(long double __x)
> _NOEXCEPT {return llroundl(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1361:36:
> error: call to 'llround' is ambiguous
> llround(_A1 __x) _NOEXCEPT {return llround((double)__x);}
> ^~~~~~~
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1355:44:
> note: candidate function
> inline _LIBCPP_INLINE_VISIBILITY long long llround(float __x)
> _NOEXCEPT {return llroundf(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1356:44:
> note: candidate function
> inline _LIBCPP_INLINE_VISIBILITY long long llround(long double __x)
> _NOEXCEPT {return llroundl(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1655:9:
> error: no member named 'llrintl' in the global namespace
> using ::llrintl;
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1656:9:
> error: no member named 'llroundl' in the global namespace
> using ::llroundl;
> ~~^
> In file included from milk/supervised/_perceptron.cpp:10:
> In file included from
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
> In file included from
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728:
>
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2:
> warning: "Using deprecated NumPy API, disable it by #defining
> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
> #warning "Using deprecated NumPy API, disable it by #defining
> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
> ^
> 1 warning and 13 errors generated.
> In file included from milk/supervised/_perceptron.cpp:4:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/iostream:40:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/istream:156:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/ostream:132:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/locale:187:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cstdlib:86:
> In file included from
> /Developer/SDKs/MacOSX10.5.sdk/usr/include/stdlib.h:61:
> /Developer/SDKs/MacOSX10.5.sdk/usr/include/available.h:111:6:
> error: __MAC_OS_X_VERSION_MAX_ALLOWED must be >=
> __MAC_OS_X_VERSION_MIN_REQUIRED
> #error __MAC_OS_X_VERSION_MAX_ALLOWED must be >=
> __MAC_OS_X_VERSION_MIN_REQUIRED
> ^
> In file included from milk/supervised/_perceptron.cpp:6:
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1339:9:
> error: no member named 'llrint' in the global namespace
> using ::llrint;
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1340:9:
> error: no member named 'llrintf' in the global namespace
> using ::llrintf;
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1342:86:
> error: use of undeclared identifier 'llrintf'
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(float __x)
> _NOEXCEPT {return llrintf(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1343:86:
> error: use of undeclared identifier 'llrintl'
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(long double __x)
> _NOEXCEPT {return llrintl(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1348:35:
> error: call to 'llrint' is ambiguous
> llrint(_A1 __x) _NOEXCEPT {return llrint((double)__x);}
> ^~~~~~
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1342:44:
> note: candidate function
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(float __x)
> _NOEXCEPT {return llrintf(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1343:44:
> note: candidate function
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(long double __x)
> _NOEXCEPT {return llrintl(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1352:9:
> error: no member named 'llround' in the global namespace
> using ::llround;
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1353:9:
> error: no member named 'llroundf' in the global namespace
> using ::llroundf;
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1355:87:
> error: use of undeclared identifier 'llroundf'
> inline _LIBCPP_INLINE_VISIBILITY long long llround(float __x)
> _NOEXCEPT {return llroundf(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1356:87:
> error: use of undeclared identifier 'llroundl'
> inline _LIBCPP_INLINE_VISIBILITY long long llround(long double __x)
> _NOEXCEPT {return llroundl(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1361:36:
> error: call to 'llround' is ambiguous
> llround(_A1 __x) _NOEXCEPT {return llround((double)__x);}
> ^~~~~~~
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1355:44:
> note: candidate function
> inline _LIBCPP_INLINE_VISIBILITY long long llround(float __x)
> _NOEXCEPT {return llroundf(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1356:44:
> note: candidate function
> inline _LIBCPP_INLINE_VISIBILITY long long llround(long double __x)
> _NOEXCEPT {return llroundl(__x);}
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1655:9:
> error: no member named 'llrintl' in the global namespace
> using ::llrintl;
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1656:9:
> error: no member named 'llroundl' in the global namespace
> using ::llroundl;
> ~~^
> In file included from milk/supervised/_perceptron.cpp:10:
> In file included from
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
> In file included from
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728:
>
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2:
> warning: "Using deprecated NumPy API, disable it by #defining
> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
> #warning "Using deprecated NumPy API, disable it by #defining
> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
> ^
> 1 warning and 13 errors generated.
> error: Command "g++ -fno-strict-aliasing
> -I/Users/davidlaxer/anaconda/include -arch x86_64 -isysroot
> /Developer/SDKs/MacOSX10.5.sdk -DNDEBUG -g -fwrapv -O3 -Wall
> -I/Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include
> -I/Users/davidlaxer/anaconda/include/python2.7 -c
> milk/supervised/_perceptron.cpp -o
> build/temp.macosx-10.5-x86_64-2.7/milk/supervised/_perceptron.o
> -std=c++0x -stdlib=libc++" failed with exit status 1
> Complete output from command /Users/davidlaxer/anaconda/bin/python
> -c "import
> setuptools;__file__='/tmp/pip-build/milk/setup.py';exec(compile(open(__file__).read().replace('\r\n',
> '\n'), __file__, 'exec'))" install --record
> /tmp/pip-tTc3Y_-record/install-record.txt
> --single-version-externally-managed:
> running install
>
> running build
>
> running config_cc
>
> unifing config_cc, config, build_clib, build_ext, build commands
> --compiler options
>
> running config_fc
>
> unifing config_fc, config, build_clib, build_ext, build commands
> --fcompiler options
>
> running build_src
>
> build_src
>
> building extension "milk.supervised._perceptron" sources
>
> building extension "milk.supervised._lasso" sources
>
> building extension "milk.unsupervised._kmeans" sources
>
> building extension "milk.supervised._tree" sources
>
> building extension "milk.unsupervised._som" sources
>
> building extension "milk.supervised._svm" sources
>
> build_src: building npy-pkg config files
>
> running build_py
>
> running build_ext
>
> customize UnixCCompiler
>
> customize UnixCCompiler using build_ext
>
> customize UnixCCompiler
>
> customize UnixCCompiler using build_ext
>
> building 'milk.supervised._perceptron' extension
>
> compiling C++ sources
>
> C compiler: g++ -fno-strict-aliasing
> -I/Users/davidlaxer/anaconda/include -arch x86_64 -isysroot
> /Developer/SDKs/MacOSX10.5.sdk -DNDEBUG -g -fwrapv -O3 -Wall
>
>
>
> compile options:
> '-I/Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include
> -I/Users/davidlaxer/anaconda/include/python2.7 -c'
>
> extra options: '-std=c++0x -stdlib=libc++'
>
> g++: milk/supervised/_perceptron.cpp
>
> In file included from milk/supervised/_perceptron.cpp:4:
>
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/iostream:40:
>
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/istream:156:
>
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/ostream:132:
>
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/locale:187:
>
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cstdlib:86:
>
> In file included from
> /Developer/SDKs/MacOSX10.5.sdk/usr/include/stdlib.h:61:
>
> /Developer/SDKs/MacOSX10.5.sdk/usr/include/available.h:111:6: error:
> __MAC_OS_X_VERSION_MAX_ALLOWED must be >= __MAC_OS_X_VERSION_MIN_REQUIRED
>
> #error __MAC_OS_X_VERSION_MAX_ALLOWED must be >=
> __MAC_OS_X_VERSION_MIN_REQUIRED
>
> ^
>
> In file included from milk/supervised/_perceptron.cpp:6:
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1339:9:
> error: no member named 'llrint' in the global namespace
>
> using ::llrint;
>
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1340:9:
> error: no member named 'llrintf' in the global namespace
>
> using ::llrintf;
>
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1342:86:
> error: use of undeclared identifier 'llrintf'
>
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(float __x)
> _NOEXCEPT {return llrintf(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1343:86:
> error: use of undeclared identifier 'llrintl'
>
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(long double __x)
> _NOEXCEPT {return llrintl(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1348:35:
> error: call to 'llrint' is ambiguous
>
> llrint(_A1 __x) _NOEXCEPT {return llrint((double)__x);}
>
> ^~~~~~
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1342:44:
> note: candidate function
>
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(float __x)
> _NOEXCEPT {return llrintf(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1343:44:
> note: candidate function
>
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(long double __x)
> _NOEXCEPT {return llrintl(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1352:9:
> error: no member named 'llround' in the global namespace
>
> using ::llround;
>
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1353:9:
> error: no member named 'llroundf' in the global namespace
>
> using ::llroundf;
>
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1355:87:
> error: use of undeclared identifier 'llroundf'
>
> inline _LIBCPP_INLINE_VISIBILITY long long llround(float __x)
> _NOEXCEPT {return llroundf(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1356:87:
> error: use of undeclared identifier 'llroundl'
>
> inline _LIBCPP_INLINE_VISIBILITY long long llround(long double __x)
> _NOEXCEPT {return llroundl(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1361:36:
> error: call to 'llround' is ambiguous
>
> llround(_A1 __x) _NOEXCEPT {return llround((double)__x);}
>
> ^~~~~~~
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1355:44:
> note: candidate function
>
> inline _LIBCPP_INLINE_VISIBILITY long long llround(float __x)
> _NOEXCEPT {return llroundf(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1356:44:
> note: candidate function
>
> inline _LIBCPP_INLINE_VISIBILITY long long llround(long double __x)
> _NOEXCEPT {return llroundl(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1655:9:
> error: no member named 'llrintl' in the global namespace
>
> using ::llrintl;
>
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1656:9:
> error: no member named 'llroundl' in the global namespace
>
> using ::llroundl;
>
> ~~^
>
> In file included from milk/supervised/_perceptron.cpp:10:
>
> In file included from
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
>
> In file included from
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728:
>
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2:
> warning: "Using deprecated NumPy API, disable it by #defining
> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
>
> #warning "Using deprecated NumPy API, disable it by #defining
> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
>
> ^
>
> 1 warning and 13 errors generated.
>
> In file included from milk/supervised/_perceptron.cpp:4:
>
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/iostream:40:
>
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/istream:156:
>
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/ostream:132:
>
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/locale:187:
>
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cstdlib:86:
>
> In file included from
> /Developer/SDKs/MacOSX10.5.sdk/usr/include/stdlib.h:61:
>
> /Developer/SDKs/MacOSX10.5.sdk/usr/include/available.h:111:6: error:
> __MAC_OS_X_VERSION_MAX_ALLOWED must be >= __MAC_OS_X_VERSION_MIN_REQUIRED
>
> #error __MAC_OS_X_VERSION_MAX_ALLOWED must be >=
> __MAC_OS_X_VERSION_MIN_REQUIRED
>
> ^
>
> In file included from milk/supervised/_perceptron.cpp:6:
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1339:9:
> error: no member named 'llrint' in the global namespace
>
> using ::llrint;
>
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1340:9:
> error: no member named 'llrintf' in the global namespace
>
> using ::llrintf;
>
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1342:86:
> error: use of undeclared identifier 'llrintf'
>
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(float __x)
> _NOEXCEPT {return llrintf(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1343:86:
> error: use of undeclared identifier 'llrintl'
>
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(long double __x)
> _NOEXCEPT {return llrintl(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1348:35:
> error: call to 'llrint' is ambiguous
>
> llrint(_A1 __x) _NOEXCEPT {return llrint((double)__x);}
>
> ^~~~~~
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1342:44:
> note: candidate function
>
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(float __x)
> _NOEXCEPT {return llrintf(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1343:44:
> note: candidate function
>
> inline _LIBCPP_INLINE_VISIBILITY long long llrint(long double __x)
> _NOEXCEPT {return llrintl(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1352:9:
> error: no member named 'llround' in the global namespace
>
> using ::llround;
>
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1353:9:
> error: no member named 'llroundf' in the global namespace
>
> using ::llroundf;
>
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1355:87:
> error: use of undeclared identifier 'llroundf'
>
> inline _LIBCPP_INLINE_VISIBILITY long long llround(float __x)
> _NOEXCEPT {return llroundf(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1356:87:
> error: use of undeclared identifier 'llroundl'
>
> inline _LIBCPP_INLINE_VISIBILITY long long llround(long double __x)
> _NOEXCEPT {return llroundl(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1361:36:
> error: call to 'llround' is ambiguous
>
> llround(_A1 __x) _NOEXCEPT {return llround((double)__x);}
>
> ^~~~~~~
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1355:44:
> note: candidate function
>
> inline _LIBCPP_INLINE_VISIBILITY long long llround(float __x)
> _NOEXCEPT {return llroundf(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1356:44:
> note: candidate function
>
> inline _LIBCPP_INLINE_VISIBILITY long long llround(long double __x)
> _NOEXCEPT {return llroundl(__x);}
>
> ^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1655:9:
> error: no member named 'llrintl' in the global namespace
>
> using ::llrintl;
>
> ~~^
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/cmath:1656:9:
> error: no member named 'llroundl' in the global namespace
>
> using ::llroundl;
>
> ~~^
>
> In file included from milk/supervised/_perceptron.cpp:10:
>
> In file included from
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
>
> In file included from
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728:
>
> /Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2:
> warning: "Using deprecated NumPy API, disable it by #defining
> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
>
> #warning "Using deprecated NumPy API, disable it by #defining
> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
>
> ^
>
> 1 warning and 13 errors generated.
>
> error: Command "g++ -fno-strict-aliasing
> -I/Users/davidlaxer/anaconda/include -arch x86_64 -isysroot
> /Developer/SDKs/MacOSX10.5.sdk -DNDEBUG -g -fwrapv -O3 -Wall
> -I/Users/davidlaxer/anaconda/lib/python2.7/site-packages/numpy/core/include
> -I/Users/davidlaxer/anaconda/include/python2.7 -c
> milk/supervised/_perceptron.cpp -o
> build/temp.macosx-10.5-x86_64-2.7/milk/supervised/_perceptron.o
> -std=c++0x -stdlib=libc++" failed with exit status 1
>
> ----------------------------------------
> Command /Users/davidlaxer/anaconda/bin/python -c "import
> setuptools;__file__='/tmp/pip-build/milk/setup.py';exec(compile(open(__file__).read().replace('\r\n',
> '\n'), __file__, 'exec'))" install --record
> /tmp/pip-tTc3Y_-record/install-record.txt
> --single-version-externally-managed failed with error code 1 in
> /tmp/pip-build/milk
> Storing complete log in /Users/davidlaxer/.pip/pip.log
> Could not install 'milk' using pip
>
>
> --
> You received this message because you are subscribed to the Google
> Groups "milk users" group.
> To unsubscribe from this group and stop receiving emails from it, send
> an email to milk-users+...@googlegroups.com.
> For more options, visit https://groups.google.com/groups/opt_out.
--
Luis Pedro Coelho | EMBL | http://luispedro.org
Recent stuff:
http://dx.doi.org/10.5334/jors.ac
http://bit.ly/coelho2013-video
http://bit.ly/general-subcellular-determination
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