SEVERE ERROR: Segmentation fault

[Vanessa Garcia]

Hello,

I received this error and have reason to believe that it may be something to do with my population relabel and/or custom migration matrix for a particular model. Four other models ran without issue.

I have 23 populations and am attempting to group the first four into a panmictic group. For the rest of the populations they are discrete with a stepping stone pattern of migration. In the parmfile, the population relabel and custom-migration are set as follows:

population-relabel={1 1 1 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19}

custom-migration={
* * 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
* * * 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 * * * 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 * * * 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 * * * 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 * * * 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 * * * 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 * * * 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 * * * 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 * * * 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 * * * 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 * * * 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 * * * 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 * * * 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 * * * 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 * * * 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 * * * 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 * * * 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 * * *
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 * *
}

In the logfile.txt the custom-migration matrix seems to be read erroneously, or at least not in line with my intentions: 

   1 Kayak_Isla     * * * * * 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 *

   1 Elfin_Cove     * * * * * 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 *
   1 Bamfield       * * * * * 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 *
   1 Port_Renfr     * * * * * 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 *
   2 Cape_Arago     * * * * * * 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 *
   3 Enderts_Be     0 0 0 0 * * * 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 *
   4 Trinidad_H     0 0 0 0 0 * * * 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
   5 Walk_On_Be     0 0 0 0 0 0 * * * 0 0 0 0 0 0 0 0 0 0 0 0 0 0
   6 Bodega_Hea     0 0 0 0 0 0 0 * * * 0 0 0 0 0 0 0 0 0 0 0 0 0
   7 Davenport_     0 0 0 0 0 0 0 0 * * * 0 0 0 0 0 0 0 0 0 0 0 0
   8 Vista_Del_     0 0 0 0 0 0 0 0 0 * * * 0 0 0 0 0 0 0 0 0 0 0
   9 Hazard_Ree     0 0 0 0 0 0 0 0 0 0 * * * 0 0 0 0 0 0 0 0 0 0
  10 Refugio_Be     0 0 0 0 0 0 0 0 0 0 0 * * * 0 0 0 0 0 0 0 0 0
  11 Carpinteri     0 0 0 0 0 0 0 0 0 0 0 0 * * * 0 0 0 0 0 0 0 0
  12 White_Poin     0 0 0 0 0 0 0 0 0 0 0 0 0 * * * 0 0 0 0 0 0 0
  13 La_Jolla       0 0 0 0 0 0 0 0 0 0 0 0 0 0 * * * 0 0 0 0 0 0
  14 Playa_Enca     0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 * * * 0 0 0 0 0
  15 El_Zeppeli     0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 * * * 0 0 0 0
  16 Punta_Clar     0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 * * * 0 0 0
  17 Punta_Baja     0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 * * * 0 0
  18 Punta_San_     0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 * * * 0
  19 Faro_San_J     0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 * * 0

  23 Punta_Lobo     0 0 0 0 * * 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 * 

Am I perhaps approaching the task of grouping the four northern populations incorrectly?

Thank You,

Vanessa Garcia

[Peter Beerli]

Check your migration , I counted 20 columns and rows instead of 19, but on my phone I may be easily miscounting

Peter

On Jul 27, 2023, at 09:24, Vanessa Garcia <veggie...@gmail.com> wrote:

Hello,

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