Question about how to used PGDSpider to convert VCF file to MIGRATE format.

[S T]

hi,

I want to use PGDSpider to convert the vcf file for migrate. I only selected the "SNP" option in  SPID conversion scrip. Then, the output file contained a lot of "?" mark.

I also tried to used vcfR2migrate in R to convert the vcf file. But, I don't know what is the file for "pop" and "in_pop" functions.

Does anyone know how to get the good file from PGDSpider?

Or what is the file format for "pop" and "in_pop" functions?

I am really new for analysis!

Thanks!

[Javier Hdz]

Hello,

did you obtain the input format?

I currently have the same problem.

Best regards

Javier