cannot find qiime2_fastq_lengths.py

[Florine Degrune]

Hi! I cannot find the python script : qiime2_fastq_lengths.py

This address is not working:  https://github.com/LangilleLab/microbiome_helper/blob/master/qiime2_fastq_lengths.py

Is there another way to get the script ?

Thank you very much !

[Robyn Wright]

Hi there,

 

Can you tell me what you’re trying to use that script for please? I can’t find reference to it anywhere in the code or the wiki of the Microbiome Helper site.

 

Thanks,

Robyn

 

--
You received this message because you are subscribed to the Google Groups "Microbiome Helper" group.
To unsubscribe from this group and stop receiving emails from it, send an email to microbiome-hel...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/microbiome-helper/30b503a8-9ff2-44f7-ba2c-020801caaccbn%40googlegroups.com.

[Florine Degrune]

Dear Robyn,

Thank you very much for your answer on this issue. I was interested in this script to generate a text table of read count per sample.

Here is were I found the original script (line 244): https://github.com/StevenMamet/qiime2-P2IRC/blob/master/qiime2_SOP_P2IRC_server.py

Thank you for your help, I am not a python coder ;)

Best regards,

Florine

You received this message because you are subscribed to a topic in the Google Groups "Microbiome Helper" group.
To unsubscribe from this topic, visit https://groups.google.com/d/topic/microbiome-helper/psN4txRf2Pk/unsubscribe.
To unsubscribe from this group and all its topics, send an email to microbiome-hel...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/microbiome-helper/AS8P191MB1429AA0BF2FC41C607214D14F8B9A%40AS8P191MB1429.EURP191.PROD.OUTLOOK.COM.

[Robyn Wright]

Hi Florine,

 

You can find all older scripts in the release of Microbiome Helper v1.0 here.

 

Please note that we recommend following the latest version of the workflow, though, where you will be able to view read counts per sample in the .qzv files on the QIIME2 viewer. Microbiome analysis is constantly being updated, and improvements are being made to tools all the time.

 

Best wishes,

Robyn

 

To view this discussion on the web visit https://groups.google.com/d/msgid/microbiome-helper/CAJyV2YryZuHf4GD6fMTiPmBKLSJvXstSVK0BjBVteyq%2BoWpN_w%40mail.gmail.com.