getting mesh after outline detection with alg1-derived set

[BacterialCells]

Hi, 

Is it possible to obtain cell meshes after detecting the cell outlines with an algorithm 1-derived set of parameters (with the getmesh value set to 0 for detection)?

Indeed I can get beautiful and super fast detection of my cells (normal looking E coli + very filamentous ones and minicells) with this parameter set if getmesh is set to 0 - but nothing when getmesh = 1. For some reason an alg 1-derived set works better than an alg4-derived one for our image resolution (0.0454 µm/px) after trying adapting several parameters, this is why I would rather stick with algorithm 1 to obtain the meshes, if possible.

Any suggestion?

[BacterialCells]

If the answer is on the microbeTracker website, please let me know, but I could not find anything that addresses this issue there.

[Jacobs-Wagner Group MicrobeTracker]

Hi,

You can try to use the function model2mesh for all the cells in your study.  The function is embedded in the main function.


G.luck.


Jacobs-Wagner Group MicrobeTracker

[BacterialCells]

Thanks! That works perfectly.