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MicrobeTracker_Jacobs-Wagner Lab
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Nita Washington
2
Jan 15
Cleaner Vents, Healthier Home – $160 Special
Me and some neigbhors we got our duct and dryer clvents cleaning services done by Matthew and the
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Cleaner Vents, Healthier Home – $160 Special
Me and some neigbhors we got our duct and dryer clvents cleaning services done by Matthew and the
Jan 15
frederi...@gmail.com
, …
Xingjian Wang
4
11/24/24
Cannot download
Hi! Thanks a lot for the link! 在2020年4月12日星期日 UTC+10 02:35:14<icir...@gmail.com> 写道: Hi! I
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Cannot download
Hi! Thanks a lot for the link! 在2020年4月12日星期日 UTC+10 02:35:14<icir...@gmail.com> 写道: Hi! I
11/24/24
chaitanya athale
9/23/22
Issue with running MicrobeTracker
Hi, I have been attemting to use MicrobeTracker to segment Phase Contrast images of E. coli. I am
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Issue with running MicrobeTracker
Hi, I have been attemting to use MicrobeTracker to segment Phase Contrast images of E. coli. I am
9/23/22
zjro...@wisc.edu
7/11/18
Cell outlines MATLAB2018
Hey Guys, So im relatively new to MATLAB and am currently trying to draw cell outlines. I managed to
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Cell outlines MATLAB2018
Hey Guys, So im relatively new to MATLAB and am currently trying to draw cell outlines. I managed to
7/11/18
r.f...@sheffield.ac.uk
, …
hazelwa...@gmail.com
13
3/3/16
Errors when using MATLAB R2014b
Hey, Replacing line 1290 and 1291 worked for me as well! Just loaded the images! Using El Capitan
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Errors when using MATLAB R2014b
Hey, Replacing line 1290 and 1291 worked for me as well! Just loaded the images! Using El Capitan
3/3/16
anna.a...@gmail.com
2/2/16
Mesh - How is it computed?
Can anyone help me in understanding how does it work the function model2mesh? Does it take in input
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Mesh - How is it computed?
Can anyone help me in understanding how does it work the function model2mesh? Does it take in input
2/2/16
Bryant Walker
10/26/15
Ghost Cells
Hello, I am using MicrobeTracker to analyze some E. Coli cells in some microfluidic chips with dead
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Ghost Cells
Hello, I am using MicrobeTracker to analyze some E. Coli cells in some microfluidic chips with dead
10/26/15
thiago...@gmail.com
10/17/15
Problem to "join" cells
Hey all, I am processing some images in MicrobeTracker and, when I try to join cells, I get the
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Problem to "join" cells
Hey all, I am processing some images in MicrobeTracker and, when I try to join cells, I get the
10/17/15
Carlos Toscano Ochoa
10/15/15
Align tool doesn't work in MATLAB 2014
Hello there! I am working with time-lapse microscopy, I've done the automatic alignment, but
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Align tool doesn't work in MATLAB 2014
Hello there! I am working with time-lapse microscopy, I've done the automatic alignment, but
10/15/15
thiago...@gmail.com
,
Bryant Walker
2
10/14/15
Problems with cell detection and processing
What are you using during imaging of your cells? Because I have had the same problem when using
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Problems with cell detection and processing
What are you using during imaging of your cells? Because I have had the same problem when using
10/14/15
Bryant Walker
, …
jakw...@gmail.com
9
10/8/15
Shifting and drifting of images
Actual I figured out that the reason microbeTracker does not save my 300x300 cellList is because it
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Shifting and drifting of images
Actual I figured out that the reason microbeTracker does not save my 300x300 cellList is because it
10/8/15
Carlos Toscano Ochoa
,
Seán Murray
3
10/8/15
Mesh refinement and timelapses
Hi! I've set fitMaxIter to 2000, fsmooth to 200, check the shift between frames and played with
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Mesh refinement and timelapses
Hi! I've set fitMaxIter to 2000, fsmooth to 200, check the shift between frames and played with
10/8/15
Adam
,
Seán Murray
6
8/31/15
Parameter questions
The ghost cell remained after this fix. I got rid of it by increasing the fitquality parameter to 0.3
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Parameter questions
The ghost cell remained after this fix. I got rid of it by increasing the fitquality parameter to 0.3
8/31/15
Adam
,
Seán Murray
4
8/31/15
Splitting cells
Hi Adam, best make a new topic as the answer might be useful for others. Then I'll post the
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Splitting cells
Hi Adam, best make a new topic as the answer might be useful for others. Then I'll post the
8/31/15
Adam
2
8/27/15
Contour lines too thick
I fixed it. Changes are here for normal display and here for split cells. On Thursday, August 27,
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Contour lines too thick
I fixed it. Changes are here for normal display and here for split cells. On Thursday, August 27,
8/27/15
Adam
,
Seán Murray
3
8/27/15
Missing aip2 mex for 64-bit Linux?
Hi Sean, That worked. Thank you very much. Adam On Wednesday, August 26, 2015 at 6:33:32 PM UTC-4,
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Missing aip2 mex for 64-bit Linux?
Hi Sean, That worked. Thank you very much. Adam On Wednesday, August 26, 2015 at 6:33:32 PM UTC-4,
8/27/15
Wen-Han Yu
, …
Seán Murray
5
8/20/15
Memory prolem
I have been working on fixes and improvements to Microbetracker and the associated functions. I still
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Memory prolem
I have been working on fixes and improvements to Microbetracker and the associated functions. I still
8/20/15
BacterialCells
,
Jacobs-Wagner Group MicrobeTracker
4
8/19/15
getting mesh after outline detection with alg1-derived set
Thanks! That works perfectly. On Tuesday, August 18, 2015 at 4:22:34 PM UTC+2, Jacobs-Wagner Group
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getting mesh after outline detection with alg1-derived set
Thanks! That works perfectly. On Tuesday, August 18, 2015 at 4:22:34 PM UTC+2, Jacobs-Wagner Group
8/19/15
denis...@gmail.com
,
Jacobs-Wagner Group MicrobeTracker
2
6/24/15
Analyzing yeast?
To get meshes for fluorescent images please set the invertimage parameter to 1. The attached image
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Analyzing yeast?
To get meshes for fluorescent images please set the invertimage parameter to 1. The attached image
6/24/15
Keren Lasker
,
Jacobs-Wagner Group MicrobeTracker
2
6/24/15
batch command for spotFinder
There is no batch option for spotFinder. On Friday, February 15, 2013 at 11:42:58 AM UTC-5, Keren
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batch command for spotFinder
There is no batch option for spotFinder. On Friday, February 15, 2013 at 11:42:58 AM UTC-5, Keren
6/24/15
bacillusjunkie
, …
Jacobs-Wagner Group MicrobeTracker
3
6/24/15
FM 4-64 membrane stain
Try to set the invertimage parameter to 1 and that should do it. On Tuesday, May 17, 2011 at 4:12:42
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FM 4-64 membrane stain
Try to set the invertimage parameter to 1 and that should do it. On Tuesday, May 17, 2011 at 4:12:42
6/24/15
annac...@gmail.com
, …
Jacobs-Wagner Group MicrobeTracker
3
6/24/15
Command line
spotFinderZ and microbetracker is a GUI based software application. There are ways to run things from
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Command line
spotFinderZ and microbetracker is a GUI based software application. There are ways to run things from
6/24/15
shao qiuyan
,
Jacobs-Wagner Group MicrobeTracker
2
6/24/15
spot intensity after spotFinderM
spotFinderM does not return intensity values. To get these values, you have to use spotFinderZ. On
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spot intensity after spotFinderM
spotFinderM does not return intensity values. To get these values, you have to use spotFinderZ. On
6/24/15
Erin Goley
,
Jacobs-Wagner Group MicrobeTracker
2
6/24/15
Binary mask of whole image from meshes?
This task is explained in the following link; http://microbetracker.org/help/helpTutirialMTNucleoid.
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Binary mask of whole image from meshes?
This task is explained in the following link; http://microbetracker.org/help/helpTutirialMTNucleoid.
6/24/15
jshr...@gmail.com
, …
seba...@gmail.com
3
5/15/15
AIP2
Hi, I am encouring the same problem in a linux 64 bit machine (MicrobeTracker 0.937). Would be
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AIP2
Hi, I am encouring the same problem in a linux 64 bit machine (MicrobeTracker 0.937). Would be
5/15/15
calum.jo...@gmail.com
,
altino...@gmail.com
2
4/2/15
Extracting mean fluo intensity values into excel file.
Hey Calum If you want fluorescent intensity. You should work on signal 1. after finding the cells,
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Extracting mean fluo intensity values into excel file.
Hey Calum If you want fluorescent intensity. You should work on signal 1. after finding the cells,
4/2/15
thomas...@gmail.com
3/6/15
Matlab crash when microbetracker analyse image
Hello, i'm informatician in a University in Belgium (UCL Louvain) and a user has this problem
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Matlab crash when microbetracker analyse image
Hello, i'm informatician in a University in Belgium (UCL Louvain) and a user has this problem
3/6/15
gr
3
3/1/15
SEGMENTATION VIOLATION - MEX-FILE
(I am working on mac os Yosemite) On Sunday, 1 March 2015 12:59:14 UTC+1, gr wrote: Dear JW-lab, I
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SEGMENTATION VIOLATION - MEX-FILE
(I am working on mac os Yosemite) On Sunday, 1 March 2015 12:59:14 UTC+1, gr wrote: Dear JW-lab, I
3/1/15
Jacob Kerssemakers
,
Anne Egholm Pedersen b
2
10/2/14
content of spots when cytoplasmic background is high
Hello Jacob, Have you tried changing the 'Fit area size, px' after clicking the Params button
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content of spots when cytoplasmic background is high
Hello Jacob, Have you tried changing the 'Fit area size, px' after clicking the Params button
10/2/14
parks...@gmail.com
9/3/14
SpotFinder Analysis
Hello, I have two questions: 1. When using the spot intensity histogram function (spotinthist), what
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SpotFinder Analysis
Hello, I have two questions: 1. When using the spot intensity histogram function (spotinthist), what
9/3/14