MicrobeTracker_Jacobs-Wagner Lab

Me and some neigbhors we got our duct and dryer clvents cleaning services done by Matthew and the

Hi! Thanks a lot for the link! 在2020年4月12日星期日 UTC+10 02:35:14<icir...@gmail.com> 写道： Hi! I

Hi, I have been attemting to use MicrobeTracker to segment Phase Contrast images of E. coli. I am

Hey Guys, So im relatively new to MATLAB and am currently trying to draw cell outlines. I managed to

Hey, Replacing line 1290 and 1291 worked for me as well! Just loaded the images! Using El Capitan

Can anyone help me in understanding how does it work the function model2mesh? Does it take in input

Hello, I am using MicrobeTracker to analyze some E. Coli cells in some microfluidic chips with dead

Hey all, I am processing some images in MicrobeTracker and, when I try to join cells, I get the

Hello there! I am working with time-lapse microscopy, I've done the automatic alignment, but

What are you using during imaging of your cells? Because I have had the same problem when using

Actual I figured out that the reason microbeTracker does not save my 300x300 cellList is because it

Hi! I've set fitMaxIter to 2000, fsmooth to 200, check the shift between frames and played with

The ghost cell remained after this fix. I got rid of it by increasing the fitquality parameter to 0.3

Hi Adam, best make a new topic as the answer might be useful for others. Then I'll post the

I fixed it. Changes are here for normal display and here for split cells. On Thursday, August 27,

Hi Sean, That worked. Thank you very much. Adam On Wednesday, August 26, 2015 at 6:33:32 PM UTC-4,

I have been working on fixes and improvements to Microbetracker and the associated functions. I still

Thanks! That works perfectly. On Tuesday, August 18, 2015 at 4:22:34 PM UTC+2, Jacobs-Wagner Group

To get meshes for fluorescent images please set the invertimage parameter to 1. The attached image

There is no batch option for spotFinder. On Friday, February 15, 2013 at 11:42:58 AM UTC-5, Keren

Try to set the invertimage parameter to 1 and that should do it. On Tuesday, May 17, 2011 at 4:12:42

spotFinderZ and microbetracker is a GUI based software application. There are ways to run things from

spotFinderM does not return intensity values. To get these values, you have to use spotFinderZ. On

This task is explained in the following link; http://microbetracker.org/help/helpTutirialMTNucleoid.

Hi, I am encouring the same problem in a linux 64 bit machine (MicrobeTracker 0.937). Would be

Hey Calum If you want fluorescent intensity. You should work on signal 1. after finding the cells,

Hello, i'm informatician in a University in Belgium (UCL Louvain) and a user has this problem

(I am working on mac os Yosemite) On Sunday, 1 March 2015 12:59:14 UTC+1, gr wrote: Dear JW-lab, I

Hello Jacob, Have you tried changing the 'Fit area size, px' after clicking the Params button

Hello, I have two questions: 1. When using the spot intensity histogram function (spotinthist), what