Error when linking cells using the editor tool

[Amilcar Perez]

Hi there. I am using the new version of microbeJ and seem to get an error after producing results when i join the cells in the editor.


[INFO] Reading available sites from https://imagej.net/
Reading header
Populating core metadata
Reading extended header
Populating original metadata
Populating OME metadata
Reading header
Populating original metadata
Populating OME metadata
Reading header
Populating core metadata
Reading extended header
Populating original metadata
Populating OME metadata
Reading header
Populating original metadata
Populating OME metadata
Reading header
Populating core metadata
Reading extended header
Populating original metadata
Populating OME metadata
Reading header
Populating original metadata
Populating OME metadata
Parsing log file
Reading header
Populating core metadata
Reading extended header
Populating original metadata
Populating OME metadata
Reading header
Populating original metadata
Populating OME metadata
Parsing deconvolution log file
Reading header
Populating core metadata
Reading extended header
Populating original metadata
Populating OME metadata
Reading header
Populating original metadata
Populating OME metadata
Parsing deconvolution log file
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException: Cannot invoke "javax.swing.JButton.getPreferredSize()" because "this.decrButton" is null
at java.desktop/javax.swing.plaf.basic.BasicScrollBarUI.layoutVScrollbar(BasicScrollBarUI.java:806)
at java.desktop/javax.swing.plaf.basic.BasicScrollBarUI.layoutContainer(BasicScrollBarUI.java:1013)
at java.desktop/java.awt.Container.layout(Container.java:1541)
at java.desktop/java.awt.Container.doLayout(Container.java:1530)
at java.desktop/java.awt.Container.validateTree(Container.java:1725)
at java.desktop/java.awt.Container.validateTree(Container.java:1734)
at java.desktop/java.awt.Container.validateTree(Container.java:1734)
at java.desktop/java.awt.Container.validateTree(Container.java:1734)
at java.desktop/java.awt.Container.validateTree(Container.java:1734)
at java.desktop/java.awt.Container.validateTree(Container.java:1734)
at java.desktop/java.awt.Container.validateTree(Container.java:1734)
at java.desktop/java.awt.Container.validate(Container.java:1660)
at java.desktop/java.awt.Window.dispatchEventImpl(Window.java:2778)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4828)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:775)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:720)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:714)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:400)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:98)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:747)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:745)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:400)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:744)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Exception in thread "AWT-EventQueue-0" java.lang.StringIndexOutOfBoundsException: Index 622 out of bounds for length 622
at java.base/jdk.internal.util.Preconditions$1.apply(Preconditions.java:55)
at java.base/jdk.internal.util.Preconditions$1.apply(Preconditions.java:52)
at java.base/jdk.internal.util.Preconditions$4.apply(Preconditions.java:213)
at java.base/jdk.internal.util.Preconditions$4.apply(Preconditions.java:210)
at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:98)
at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:106)
at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:302)
at java.base/java.lang.String.checkIndex(String.java:4832)
at java.base/java.lang.StringLatin1.charAt(StringLatin1.java:46)
at java.base/java.lang.String.charAt(String.java:1555)
at ij.gui.Toolbar.v(Toolbar.java:584)
at ij.gui.Toolbar.drawIcon(Toolbar.java:537)
at ij.gui.Toolbar.drawButton(Toolbar.java:352)
at ij.gui.Toolbar.drawButtons(Toolbar.java:300)
at ij.gui.Toolbar.paint(Toolbar.java:740)
at java.desktop/java.awt.Canvas.update(Canvas.java:149)
at java.desktop/sun.awt.RepaintArea.updateComponent(RepaintArea.java:255)
at java.desktop/sun.awt.RepaintArea.paint(RepaintArea.java:232)
at java.desktop/sun.awt.windows.WComponentPeer.handleEvent(WComponentPeer.java:371)
at java.desktop/java.awt.Component.dispatchEventImpl(Component.java:5057)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4828)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:775)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:720)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:714)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:400)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:98)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:747)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:745)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:400)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:744)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Exception in thread "AWT-EventQueue-0" java.lang.IllegalArgumentException: Mask size (12x13) != ROI size (300x300)
at ij.process.ShortProcessor.getHistogram2(ShortProcessor.java:1097)
at ij.process.ShortProcessor.getHistogram2(ShortProcessor.java:1071)
at ij.process.ShortStatistics.<init>(ShortStatistics.java:37)
at ij.process.ImageStatistics.getStatistics(ImageStatistics.java:97)
at com.ducret.resultJ.ImStatistics.getImStatistics(ImStatistics.java:201)
at com.ducret.resultJ.ImStatistics.getStatistics(ImStatistics.java:135)
at com.ducret.resultJ.ImStatistics.getStatistics(ImStatistics.java:131)
at com.ducret.resultJ.ImStatistics.getStatistics(ImStatistics.java:127)
at com.ducret.resultJ.ImStatistics.getStatistics(ImStatistics.java:123)
at com.ducret.resultJ.ImStatistics.getStatistics(ImStatistics.java:210)
at com.ducret.resultJ.ImFiltered.getBackgroundSignal(ImFiltered.java:104)
at com.ducret.resultJ.ImChannel.getBackgroundSignal(ImChannel.java:129)
at com.ducret.microbeJ.Boundary.getProfiles(Boundary.java:2070)
at com.ducret.microbeJ.Particle.setToResult(Particle.java:539)
at com.ducret.microbeJ.ListOfParticle.getResult(ListOfParticle.java:1660)
at com.ducret.microbeJ.ListOfSubParticle.setToResult(ListOfSubParticle.java:354)
at com.ducret.microbeJ.ListOfSubParticle.getResult(ListOfSubParticle.java:347)
at com.ducret.microbeJ.Experiment.setResult(Experiment.java:711)
at com.ducret.microbeJ.Experiment.getResult(Experiment.java:600)
at com.ducret.microbeJ.Experiment.displayEditedExperiment(Experiment.java:589)
at com.ducret.microbeJ.EditExperimentTreeFrame$1.action(EditExperimentTreeFrame.java:54)
at com.ducret.resultJ.JButtonWheelListener.actionPerformed(JButtonWheelListener.java:70)
at java.desktop/javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1972)
at java.desktop/javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2314)
at java.desktop/javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:407)
at java.desktop/javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:262)
at java.desktop/javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:279)
at java.desktop/java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:297)
at java.desktop/java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:297)
at java.desktop/java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:297)
at java.desktop/java.awt.Component.processMouseEvent(Component.java:6621)
at java.desktop/javax.swing.JComponent.processMouseEvent(JComponent.java:3398)
at java.desktop/java.awt.Component.processEvent(Component.java:6386)
at java.desktop/java.awt.Container.processEvent(Container.java:2266)
at java.desktop/java.awt.Component.dispatchEventImpl(Component.java:4996)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2324)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4828)
at java.desktop/java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4948)
at java.desktop/java.awt.LightweightDispatcher.processMouseEvent(Container.java:4575)
at java.desktop/java.awt.LightweightDispatcher.dispatchEvent(Container.java:4516)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2310)
at java.desktop/java.awt.Window.dispatchEventImpl(Window.java:2780)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4828)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:775)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:720)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:714)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:400)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:98)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:747)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:745)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:400)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:744)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)