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Janine Lux
Apr 22
cannot recover/open results .res file
Hello everyone, I did several analysis with MicrobeJ and saved the results as a .res file. Now I can
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cannot recover/open results .res file
Hello everyone, I did several analysis with MicrobeJ and saved the results as a .res file. Now I can
Apr 22
Xinxing Yang
,
Jordan Barrows
2
Apr 18
Any way to download the demograph data?
Hi Xinxing, If you plot an XProfile using the Profile(s) function, you can right click on the graph
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Any way to download the demograph data?
Hi Xinxing, If you plot an XProfile using the Profile(s) function, you can right click on the graph
Apr 18
Matthew Theodore
Apr 9
Exciting to see new 5.13p, anyone know where updates to release notes/readme/documentation is?
Hi all, It looks like an update was listed in the normal update category versus the beta category in
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Exciting to see new 5.13p, anyone know where updates to release notes/readme/documentation is?
Hi all, It looks like an update was listed in the normal update category versus the beta category in
Apr 9
Mackenzie Brooks
Feb 27
Fluorescent Cell Detection
Hi, I am trying to detect cells with GFP and have had no luck so far. The tutorials only deal with
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Fluorescent Cell Detection
Hi, I am trying to detect cells with GFP and have had no luck so far. The tutorials only deal with
Feb 27
Frances Harris
Feb 26
Batch Analysis with Binary Mask input
Hi, Is there a way to do batch analysis when I have a manual binary mask to input corresponding to
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Batch Analysis with Binary Mask input
Hi, Is there a way to do batch analysis when I have a manual binary mask to input corresponding to
Feb 26
Frances Harris
Feb 26
Matlab Export Error and CSV Export
Hi, When I try to load my matlab results file into matlab (2022a), I get the following error message.
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Matlab Export Error and CSV Export
Hi, When I try to load my matlab results file into matlab (2022a), I get the following error message.
Feb 26
Junsung Lee
Feb 18
Exporting cell boundaries as a mask
Hi all, Does anyone know how to export cell boundaries as a binary mask? I am trying to detect
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Exporting cell boundaries as a mask
Hi all, Does anyone know how to export cell boundaries as a binary mask? I am trying to detect
Feb 18
PG90326
Feb 7
Caulobacter crescentus stalk detection
Hi MicrobeJ community, I am trying to analyse some images of caulobacter crescentus with fluorescence
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Caulobacter crescentus stalk detection
Hi MicrobeJ community, I am trying to analyse some images of caulobacter crescentus with fluorescence
Feb 7
Jordan Barrows
,
Anselmet Marie
2
12/15/23
Cannot generate demographs upon re-opening a .res file
Hello Jordan, I have exactly the same problem, but also when creating a results window de-novo. Which
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Cannot generate demographs upon re-opening a .res file
Hello Jordan, I have exactly the same problem, but also when creating a results window de-novo. Which
12/15/23
Anselmet Marie
12/4/23
Bugs with the MicrobeJ beta version (of June 21th, 2023)
Hello everyone, I have some bugs with the last beta version of MicrobeJ. For instance, I don't
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Bugs with the MicrobeJ beta version (of June 21th, 2023)
Hello everyone, I have some bugs with the last beta version of MicrobeJ. For instance, I don't
12/4/23
Estelle B
11/16/23
Celles excluded from analysis for no reason?
Hi all, I am using masks to segment my cells, it works wonderfully but some cell are excluded from
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Celles excluded from analysis for no reason?
Hi all, I am using masks to segment my cells, it works wonderfully but some cell are excluded from
11/16/23
Estelle B
11/16/23
How to launch batch processing
Hi all, I am new to MicrobeJ (using 5.13o (17)) and would like to batch process my images. I can'
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How to launch batch processing
Hi all, I am new to MicrobeJ (using 5.13o (17)) and would like to batch process my images. I can'
11/16/23
magsy...@gmail.com
, …
Angeline reboul
3
11/14/23
Q&A
Maxima tab not showing up in results table
Dear all, did you get an answer to this problem, i am having it also. Usually, when i restart the
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Q&A
Maxima tab not showing up in results table
Dear all, did you get an answer to this problem, i am having it also. Usually, when i restart the
11/14/23
Iago López Grobas
8/31/23
bug in curvature
Hello, I think there is a problem in how MicrobeJ calculates the curvature. I have a single bacterium
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bug in curvature
Hello, I think there is a problem in how MicrobeJ calculates the curvature. I have a single bacterium
8/31/23
Marie Anselmet
8/3/23
PARENT.distance.pole feature
Hello everyone, I am using MicrobeJ to detect fluorescent foci that are moving in bacterial cells,
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PARENT.distance.pole feature
Hello everyone, I am using MicrobeJ to detect fluorescent foci that are moving in bacterial cells,
8/3/23
Angela F
7/26/23
Detection mode with helical cells
Hi Everyone, I am trying to use microbeJ to analyze the morphology of helical cells (specifically
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Detection mode with helical cells
Hi Everyone, I am trying to use microbeJ to analyze the morphology of helical cells (specifically
7/26/23
Marie Anselmet
6/14/23
Detection with binary masks
Hello everyone, I am trying to provide binary masks from Omnipose to MicrobeJ to a more accurate
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Detection with binary masks
Hello everyone, I am trying to provide binary masks from Omnipose to MicrobeJ to a more accurate
6/14/23
Martha Chen
, …
Marie Anselmet
5
6/6/23
Manual Editor tools no longer working
Thanks a lot ! I will try to do that. Marie Le mardi 16 mai 2023 à 14:54:42 UTC+2, roberta...@gmail.
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Manual Editor tools no longer working
Thanks a lot ! I will try to do that. Marie Le mardi 16 mai 2023 à 14:54:42 UTC+2, roberta...@gmail.
6/6/23
Marie Anselmet
,
Jordan Barrows
5
6/6/23
Cell lineage misses cell divisions
Thanks a lot, I will do that. Best, Marie Le mercredi 17 mai 2023 à 19:28:56 UTC+2, jordan.m...@gmail
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Cell lineage misses cell divisions
Thanks a lot, I will do that. Best, Marie Le mercredi 17 mai 2023 à 19:28:56 UTC+2, jordan.m...@gmail
6/6/23
Peter Lüttge Jordal
5/31/23
Can't get objects detected
Hi MicrobeJ community. I would love to do automated, quantitative microscopy and really like the
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Can't get objects detected
Hi MicrobeJ community. I would love to do automated, quantitative microscopy and really like the
5/31/23
ma2...@cornell.edu
, …
Iago López Grobas
4
5/18/23
Q&A
Time-Lapse how to determine time of first division and elongation rate
Hello Jordan, Are you doing the segmentation with MicrobeJ? Because in my case I have a binary mask
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Q&A
Time-Lapse how to determine time of first division and elongation rate
Hello Jordan, Are you doing the segmentation with MicrobeJ? Because in my case I have a binary mask
5/18/23
Jordan Barrows
5/13/23
Settings not saved in new versions
Hey all, I've been trying to use MicrobeJ on a different computer and I've been having
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Settings not saved in new versions
Hey all, I've been trying to use MicrobeJ on a different computer and I've been having
5/13/23
Finn M
,
Jordan Barrows
2
5/13/23
Relate Feature to Parental Bacteria?
Hey Findlay, I'm not sure if someone answered this yet or not... I don't know if there's
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Relate Feature to Parental Bacteria?
Hey Findlay, I'm not sure if someone answered this yet or not... I don't know if there's
5/13/23
Estelle B
4/25/23
Results can't be displayed/saved in the lastest versions
Hi there, I am trying to use the latest version (5.13 n and o) to be able to use masks generated with
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Results can't be displayed/saved in the lastest versions
Hi there, I am trying to use the latest version (5.13 n and o) to be able to use masks generated with
4/25/23
Florencia Martinez
3/31/23
NaN values in intensity
Hi, I am using MicrobeJ v 5.13n to analyze bacteria tagged with different flourescent probes. I am
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NaN values in intensity
Hi, I am using MicrobeJ v 5.13n to analyze bacteria tagged with different flourescent probes. I am
3/31/23
Emily Knebel
3/28/23
Failure to detect particles and median axis
Hi, I hadn't used MicrobeJ on my Mac in a little while but had updated it yesterday before trying
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Failure to detect particles and median axis
Hi, I hadn't used MicrobeJ on my Mac in a little while but had updated it yesterday before trying
3/28/23
Geraldine
, …
Sayak Mukhopadhyay
3
3/22/23
Q&A
cell detection from fluorescence signal
Hi Brun Lab, I am interested in length and fluorescence intensity information from my images. I don
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Q&A
cell detection from fluorescence signal
Hi Brun Lab, I am interested in length and fluorescence intensity information from my images. I don
3/22/23
Marta
2/1/23
Curvature units
Hi, MicrobeJ documentation says about curvature "Values are expressed in inverse pixels or in
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Curvature units
Hi, MicrobeJ documentation says about curvature "Values are expressed in inverse pixels or in
2/1/23
Sigal
, …
Nathaniel Flynn
4
1/10/23
Q&A
Can't detect maxima
I am also having the same issue. I am able to detect one or two, but not all maxima On Wednesday, May
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Q&A
Can't detect maxima
I am also having the same issue. I am able to detect one or two, but not all maxima On Wednesday, May
1/10/23
Ute Muh
2
10/7/22
Particle detection
I dealt with the problem by switching the auto-threshold method from default to "minimum".
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Particle detection
I dealt with the problem by switching the auto-threshold method from default to "minimum".
10/7/22