MicrobeJ Project

Hi, i am trying to detect my cells to analyze the area and circularity. In order to avoid Background

Hello, I am trying to analyze the localization of a fluorescently tagged protein inside bacterial

I am pretty sure the width data there is not referring to the pole specifically... actually if you

This was tested with MicrobeJ 5.13p(1) and 5.13p(27). For features, parent.localization.normalized.x

Dear MicrobeJ Team, there is the option to use predefined ROIs from the ROI manager to define the

Is there a way to rename experiments in the ResultJ table?

Dear Florencia, I'm having the same problem. Did you find a way to fixed it? Please, let me know!

Did you manage to fix this problem? I'm also looking to do this and I cant figure it out? Thanks!

Hi, I recently changed my system from Windowns to MAC. When I took my .res files to MicrobeJ on the

I always use my original .nd2 files when I'm quantifying. I don't think you can use .png but

I am not an expert, but I believe that if you change the background to dark, and then make sure your

Hi! I've been working to quantify some fluorescence signals from a DAPI stain in H. neapolitanus.

Hi everyone, I recently updated MicrobeJ to version 5.13p, and there is a new measurement for

Hello everyone, I did several analysis with MicrobeJ and saved the results as a .res file. Now I can

Hi Xinxing, If you plot an XProfile using the Profile(s) function, you can right click on the graph

Hi all, It looks like an update was listed in the normal update category versus the beta category in

Hi, Is there a way to do batch analysis when I have a manual binary mask to input corresponding to

Hi, When I try to load my matlab results file into matlab (2022a), I get the following error message.

Hi all, Does anyone know how to export cell boundaries as a binary mask? I am trying to detect

Hi MicrobeJ community, I am trying to analyse some images of caulobacter crescentus with fluorescence

Hello Jordan, I have exactly the same problem, but also when creating a results window de-novo. Which

Hello everyone, I have some bugs with the last beta version of MicrobeJ. For instance, I don't

Hi all, I am using masks to segment my cells, it works wonderfully but some cell are excluded from

Hi all, I am new to MicrobeJ (using 5.13o (17)) and would like to batch process my images. I can'

Dear all, did you get an answer to this problem, i am having it also. Usually, when i restart the

Hello, I think there is a problem in how MicrobeJ calculates the curvature. I have a single bacterium

Hello everyone, I am using MicrobeJ to detect fluorescent foci that are moving in bacterial cells,

Hi Everyone, I am trying to use microbeJ to analyze the morphology of helical cells (specifically

Hello everyone, I am trying to provide binary masks from Omnipose to MicrobeJ to a more accurate

Thanks a lot ! I will try to do that. Marie Le mardi 16 mai 2023 à 14:54:42 UTC+2, roberta...@gmail.