otuschim.fasta

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Ulrike Obertegger

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Jul 10, 2017, 9:06:07 AM7/10/17
to micca users
Dear Micca users,

how can I see how often a chimera sequence has been found in my samples?
The otuschima.fasta file contains all the sequences but where can I see how often it has been found?

example of otuschima.fasta - first sequence
>M00380:105:000000000-AY7YK:1:1101:12742:8473;sample=21-Pl1-G6;size=2743;
TAGGGAATATTGGACAATGGGGGCAACCCTGATCCAGCAATGCCGCGTGAGTGATGAAGGCCTTAGGGTTGTAAAGCTCT
TTTACCAGAGATGATAATGACAGTATCTGGGGAATAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGG
GGCTAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCACGTAGGCGGCGATTTAAGTCAGAGGTGAAAGCCCGGGGCTCAA
CCCCGGAACTGCCTTTGAGACTGGATTGCTTGAATCCGGGAGAGGTGAGTGGAATTCCGAGTGTAGAGGTGAAATTCGTA
GATATTCGGAAGAACACCAGTGGCGAAGGCGGCTCACTGGACCGGCATTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAA
CA

best regards,
Ulrike




Davide Albanese

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Jul 11, 2017, 5:25:56 AM7/11/17
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The tag "size" shows how many times the chimeric sequence has been found.

Ciao,
Davide

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