Error: no dist/classifier.jar found in RDPPATH

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Jade Ermita

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May 2, 2017, 3:27:30 PM5/2/17
to micca users
Hello,

I was trying to classify my OTUs using open reference to RDP classifier. I've set the RDP path to the directory I was working on and I still got this Error:

 Error: Error: no dist/classifier.jar found in RDPPATH

How to troubleshoot this error?

Thanks,
Jade



 

Davide Albanese

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May 3, 2017, 7:08:56 AM5/3/17
to micca users

Dear Jade,
did you set the environment variable RDPPATH? (http://micca.org/docs/latest/install.html#install-rdp-classifier-optional), e.g.:

$ export RDPPATH=/path-to-rdp-classifier/rdp_classifier_2.11/

Jade Ermita

unread,
May 3, 2017, 3:55:50 PM5/3/17
to micca users
Hi Davide,

I have set the RDP Path. Kindly see the scripts that I had:

unzip rdp_classifier_2.11.zip

export RDPPATH=/Analysis/2017_27F_Binned_Cor/rdp_classifier_2.11/

micca classify -m rdp -i 16S_open_ref_AM_otus/16S_AM_otus.fasta -o 16S_open_ref_AM_otus/16S_AM_otus_taxa.txt 

But then I still got the Error: no dist/classifier.jar found in RDPPATH. 

Thanks,
Jade



Davide Albanese

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May 4, 2017, 3:41:47 AM5/4/17
to micca users
Dear Jade,
please repeat the downloading and the unzipping of rdp_classifier_2.11.zip:


and then, without changing the directory, run the command pwd and post the output:

$ pwd

Bukola Rhoda

unread,
Sep 7, 2018, 12:59:39 PM9/7/18
to micca users
I still experienced the same error after repeating the download and unzipping. Please how can this problem be solved

Bukola Rhoda

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Sep 7, 2018, 1:01:14 PM9/7/18
to micca users
This the
root@aremu-HP-ProBook-450-G1:/home/aremu/mwanihana# wget https://sourceforge.net/projects/rdp-classifier/files/rdp-classifier/rdp_classifier_2.11.zip
--2018-09-07 18:51:25--  https://sourceforge.net/projects/rdp-classifier/files/rdp-classifier/rdp_classifier_2.11.zip
Resolving sourceforge.net (sourceforge.net)... 216.105.38.13
Connecting to sourceforge.net (sourceforge.net)|216.105.38.13|:443... connected.
HTTP request sent, awaiting response... 302 Found
Location: https://sourceforge.net/projects/rdp-classifier/files/rdp-classifier/rdp_classifier_2.11.zip/download [following]
--2018-09-07 18:51:29--  https://sourceforge.net/projects/rdp-classifier/files/rdp-classifier/rdp_classifier_2.11.zip/download
Connecting to sourceforge.net (sourceforge.net)|216.105.38.13|:443... connected.
HTTP request sent, awaiting response... 302 Found
Location: https://downloads.sourceforge.net/project/rdp-classifier/rdp-classifier/rdp_classifier_2.11.zip?r=&ts=1536339091&use_mirror=tenet [following]
--2018-09-07 18:51:31--  https://downloads.sourceforge.net/project/rdp-classifier/rdp-classifier/rdp_classifier_2.11.zip?r=&ts=1536339091&use_mirror=tenet
Resolving downloads.sourceforge.net (downloads.sourceforge.net)... 216.105.38.13
Connecting to downloads.sourceforge.net (downloads.sourceforge.net)|216.105.38.13|:443... connected.
HTTP request sent, awaiting response... 302 Found
Location: https://tenet.dl.sourceforge.net/project/rdp-classifier/rdp-classifier/rdp_classifier_2.11.zip [following]
--2018-09-07 18:51:34--  https://tenet.dl.sourceforge.net/project/rdp-classifier/rdp-classifier/rdp_classifier_2.11.zip
Resolving tenet.dl.sourceforge.net (tenet.dl.sourceforge.net)... 155.232.191.245
Connecting to tenet.dl.sourceforge.net (tenet.dl.sourceforge.net)|155.232.191.245|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 159886699 (152M) [application/octet-stream]
Saving to: ‘rdp_classifier_2.11.zip’

rdp_classifier_2.11 100%[===================>] 152.48M  11.7MB/s    in 18s    

2018-09-07 18:51:53 (8.33 MB/s) - ‘rdp_classifier_2.11.zip’ saved [159886699/159886699]

root@aremu-HP-ProBook-450-G1:/home/aremu/mwanihana# unzip rdp_classifier_2.11.zip
Archive:  rdp_classifier_2.11.zip
   creating: rdp_classifier_2.11/
   creating: rdp_classifier_2.11/samplefiles/
  inflating: rdp_classifier_2.11/samplefiles/rrnDBv4.2.2_copynumber.txt 
  inflating: rdp_classifier_2.11/samplefiles/new_trainset.fasta 
  inflating: rdp_classifier_2.11/samplefiles/new_trainset_db_taxid.txt 
  inflating: rdp_classifier_2.11/samplefiles/rRNAClassifier.properties 
  inflating: rdp_classifier_2.11/samplefiles/Armatimonadetes.fasta 
  inflating: rdp_classifier_2.11/samplefiles/USGA_2_4_B_trimmed.fasta 
  inflating: rdp_classifier_2.11/samplefiles/Native_1_4_A_trimmed.fasta 
   creating: rdp_classifier_2.11/lib/
  inflating: rdp_classifier_2.11/lib/jcommon-1.0.16.jar 
  inflating: rdp_classifier_2.11/lib/jcommon-1.0.16-sources.jar 
  inflating: rdp_classifier_2.11/lib/commons-io-2.4-javadoc.jar 
  inflating: rdp_classifier_2.11/lib/junit-4.8.2-sources.jar 
  inflating: rdp_classifier_2.11/lib/commons-cli-1.2-sources.jar 
  inflating: rdp_classifier_2.11/lib/commons-io-2.4-sources.jar 
  inflating: rdp_classifier_2.11/lib/junit-4.8.2-javadoc.jar 
  inflating: rdp_classifier_2.11/lib/commons-io-2.4.jar 
  inflating: rdp_classifier_2.11/lib/jcommon-1.0.16-javadoc.jar 
  inflating: rdp_classifier_2.11/lib/jfreechart-1.0.13.jar 
  inflating: rdp_classifier_2.11/lib/junit-4.8.2.jar 
  inflating: rdp_classifier_2.11/lib/commons-cli-1.2.jar 
  inflating: rdp_classifier_2.11/lib/commons-cli-1.2-javadoc.jar 
   creating: rdp_classifier_2.11/dist/
   creating: rdp_classifier_2.11/dist/lib/
  inflating: rdp_classifier_2.11/dist/lib/jcommon-1.0.16.jar 
  inflating: rdp_classifier_2.11/dist/lib/TaxonomyTree.jar 
  inflating: rdp_classifier_2.11/dist/lib/AlignmentTools.jar 
  inflating: rdp_classifier_2.11/dist/lib/commons-io-2.4.jar 
  inflating: rdp_classifier_2.11/dist/lib/jfreechart-1.0.13.jar 
  inflating: rdp_classifier_2.11/dist/lib/commons-cli-1.2.jar 
  inflating: rdp_classifier_2.11/dist/lib/ReadSeq.jar 
  inflating: rdp_classifier_2.11/dist/classifier.jar 
  inflating: rdp_classifier_2.11/LICENSE 
 extracting: rdp_classifier_2.11/.git 
  inflating: rdp_classifier_2.11/ivy.xml 
 extracting: rdp_classifier_2.11/.gitignore 
  inflating: rdp_classifier_2.11/build.xml 
   creating: rdp_classifier_2.11/src/
   creating: rdp_classifier_2.11/src/edu/
   creating: rdp_classifier_2.11/src/edu/msu/
   creating: rdp_classifier_2.11/src/edu/msu/cme/
   creating: rdp_classifier_2.11/src/edu/msu/cme/rdp/
   creating: rdp_classifier_2.11/src/edu/msu/cme/rdp/taxatree/
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/taxatree/UnifracTree.java 
   creating: rdp_classifier_2.11/src/edu/msu/cme/rdp/taxatree/utils/
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/taxatree/utils/ClassifierTreeBuilder.java 
   creating: rdp_classifier_2.11/src/edu/msu/cme/rdp/unifrac/
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/unifrac/Unifrac.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/unifrac/UnifracTreeBuilder.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/unifrac/UnifracTaxon.java 
   creating: rdp_classifier_2.11/src/edu/msu/cme/rdp/multicompare/
   creating: rdp_classifier_2.11/src/edu/msu/cme/rdp/multicompare/taxon/
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/multicompare/taxon/MCTaxon.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/multicompare/MultiClassifier.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/multicompare/Main.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/multicompare/MultiClassifierResult.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/multicompare/MCSampleResult.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/multicompare/MCSample.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/multicompare/MergeTaxonCount.java 
   creating: rdp_classifier_2.11/src/edu/msu/cme/rdp/multicompare/gridware/
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/multicompare/gridware/ClassifierGridware.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/multicompare/Reprocess.java 
   creating: rdp_classifier_2.11/src/edu/msu/cme/rdp/multicompare/visitors/
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/multicompare/visitors/DefaultPrintVisitor.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/multicompare/visitors/EstimateSPrintVisitor.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/multicompare/MCSamplePrintUtil.java 
   creating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/Classifier.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/TrainingDataException.java 
   creating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/RawGenusWordConditionalProb.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/CopyNumberParser.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/NameRankDupException.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/Taxonomy.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/LineageSequenceParser.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/LineageSequence.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/RawHierarchyTree.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/ClassifierTraineeMaker.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/TreeFactory.java 
   creating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/DecisionMaker.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/StatusCountUtils.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/ValidClassificationResultFacade.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/NBClassifier.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/Taxonomy.java 
   creating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/distance/
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/distance/CompareTrainingSets.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/distance/PairwiseSeqDistance.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/distance/TaxaSimilarityMain.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/distance/BoxPlotUtils.java 
   creating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/crossvalidate/
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/crossvalidate/RdmSelectTaxon.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/crossvalidate/CrossValidateMain.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/crossvalidate/CrossValidate.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/CorrectAssignment.java 
   creating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/movingwindow/
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/movingwindow/MainMovingWindow.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/movingwindow/Window.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/movingwindow/FindWindowFrame.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/movingwindow/WindowTester.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/SortedROCSet.java 
   creating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/leaveoneout/
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/leaveoneout/CompareMisclassified.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/leaveoneout/LeaveOneOutTester.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/leaveoneout/LeaveOneOutTesterMain.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/TreeFactory.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/ValidationClassificationResult.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/AddLogs.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/StatusCount.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/train/validation/HierarchyTree.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/TrainingInfo.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/GenusWordConditionalProb.java 
   creating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/rrnaclassifier/
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/rrnaclassifier/ClassificationParser.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/ClassificationResult.java 
   creating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/io/
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/io/TreeFileParser.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/io/LogWordPriorFileParser.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/io/ProbIndexFileParser.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/io/GenusWordProbFileParser.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/io/ClassificationResultFormatter.java 
   creating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/cli/
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/cli/ClassifierMain.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/cli/CmdOptions.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/ClassifierCmd.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/RankAssignment.java 
   creating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/utils/
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/utils/ClassifierFactory.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/utils/ClassifierSequence.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/utils/HierarchyVersion.java 
   creating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/comparison/
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/comparison/Score.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/comparison/Taxon.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/comparison/Ztable.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/comparison/SeqInfo.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/comparison/ComparisonBrowserNode.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/comparison/SeqErrorBean.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/comparison/SigCalculator.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/comparison/PixelCalculatorBean.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/comparison/ComparisonCmd.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/comparison/TaxonTree.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/comparison/ComparisonResultTreeSet.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/comparison/AbstractNode.java 
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  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/comparison/ComparisonBrowserBean.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/ShortSequenceException.java 
  inflating: rdp_classifier_2.11/src/edu/msu/cme/rdp/classifier/HierarchyTree.java 
   creating: rdp_classifier_2.11/nbproject/
  inflating: rdp_classifier_2.11/nbproject/genfiles.properties 
  inflating: rdp_classifier_2.11/nbproject/project.properties 
  inflating: rdp_classifier_2.11/nbproject/build-impl.xml 
  inflating: rdp_classifier_2.11/nbproject/project.xml 
  inflating: rdp_classifier_2.11/README 
   creating: rdp_classifier_2.11/test/
   creating: rdp_classifier_2.11/test/edu/
   creating: rdp_classifier_2.11/test/edu/msu/
   creating: rdp_classifier_2.11/test/edu/msu/cme/
   creating: rdp_classifier_2.11/test/edu/msu/cme/rdp/
   creating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/
   creating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/train/
  inflating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/train/RawHierarchyTreeTest.java 
  inflating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/train/GoodWordIteratorTest.java 
  inflating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/train/RawSequenceParserTest.java 
  inflating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/train/TreeFactoryTest.java 
   creating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/train/validation/
  inflating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/train/validation/GoodWordIteratorTest.java 
  inflating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/train/validation/AddLogsTest.java 
  inflating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/train/validation/TreeFactoryTest.java 
  inflating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/train/validation/NBClassifierTest.java 
  inflating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/train/validation/DecisionMakerTest.java 
  inflating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/train/validation/SequenceParserTest.java 
  inflating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/train/validation/ClassifierTestSuite.java 
  inflating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/train/validation/HierarchyTreeTest.java 
  inflating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/train/TrainSuite.java 
   creating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/rrnaclassifier/
  inflating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/rrnaclassifier/TrainingInfoTest.java 
  inflating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/rrnaclassifier/ClassifierTest.java 
  inflating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/rrnaclassifier/ParsedSequenceTest.java 
  inflating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/rrnaclassifier/TreeFileParserTest.java 
  inflating: rdp_classifier_2.11/test/edu/msu/cme/rdp/classifier/rrnaclassifier/HierarchyTreeTest.java 
   creating: rdp_classifier_2.11/test/test/
   creating: rdp_classifier_2.11/test/test/classifier/
  inflating: rdp_classifier_2.11/test/test/classifier/test_bergeyTrainingTree.xml 
  inflating: rdp_classifier_2.11/test/test/classifier/testDMtrain.fasta 
  inflating: rdp_classifier_2.11/test/test/classifier/testNBClassifierSet.fasta 
  inflating: rdp_classifier_2.11/test/test/classifier/testTaxonForQuerySeq.txt 
  inflating: rdp_classifier_2.11/test/test/classifier/testTreeFile.xml 
  inflating: rdp_classifier_2.11/test/test/classifier/sample2.fasta 
  inflating: rdp_classifier_2.11/test/test/classifier/testDMtaxon.txt 
  inflating: rdp_classifier_2.11/test/test/classifier/testSeqParser.fasta 
  inflating: rdp_classifier_2.11/test/test/classifier/testTrainingSet.fasta 
  inflating: rdp_classifier_2.11/test/test/classifier/testQuerySeq.fasta 
  inflating: rdp_classifier_2.11/test/test/classifier/testLogWordPrior.txt 
  inflating: rdp_classifier_2.11/test/test/classifier/testClassifier.properties 
  inflating: rdp_classifier_2.11/test/test/classifier/testGenus_probList.txt 
  inflating: rdp_classifier_2.11/test/test/classifier/testTaxon.txt 
  inflating: rdp_classifier_2.11/test/test/classifier/testProbIndex.txt 
  inflating: rdp_classifier_2.11/manifest.mf 
root@aremu-HP-ProBook-450-G1:/home/aremu/mwanihana# pwd
/home/aremu/mwanihana
root@aremu-HP-ProBook-450-G1:/home/aremu/mwanihana# micca classify -m rdp -i denovo_greedy_otus/otus.fasta -o denovo_greedy_otus/taxa.txt

Error: Error: no dist/classifier.jar found in RDPPATH

root@aremu-HP-ProBook-450-G1:/home/aremu/mwanihana# micca classify -m rdp -i denovo_greedy_otus/otus.fasta -o denovo_greedy_otus/taxa.txt

Davide Albanese

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Sep 10, 2018, 4:13:40 AM9/10/18
to micca users
Dear Bukola,
did you set the environment variable RDPPATH? (http://micca.org/docs/latest/install.html#install-rdp-classifier-optional), e.g.:

$ export RDPPATH=/home/aremu/mwanihana/rdp_classifier_2.11/
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