MIAPA

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7/21/14

vocabulary for phylogenetic inference methods

Some of you may be interested in weighing in on a discussion about vocabulary for phylogenetic

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vocabulary for phylogenetic inference methods

Some of you may be interested in weighing in on a discussion about vocabulary for phylogenetic

7/21/14

Hilmar Lapp, Rutger Vos3

8/8/13

MIAPA checklist under revision control

On Aug 8, 2013, at 4:34 PM, Rutger Vos wrote: I see a stub script to check whether a nexml file is

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MIAPA checklist under revision control

On Aug 8, 2013, at 4:34 PM, Rutger Vos wrote: I see a stub script to check whether a nexml file is

8/8/13

6/8/13

Fwd: iEvoBio submission: Accepted

I should have added that a poster submission to the 2013 ISMB conference with a similar abstract and

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Fwd: iEvoBio submission: Accepted

I should have added that a poster submission to the 2013 ISMB conference with a similar abstract and

6/8/13

Arlin Stoltzfus, … Karen Cranston4

5/8/13

Open Annotation data model roll-out

Indeed, Arlin. Thanks for the detailed summary! I've already forwarded to the Open Tree software

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Open Annotation data model roll-out

Indeed, Arlin. Thanks for the detailed summary! I've already forwarded to the Open Tree software

5/8/13

4/22/13

which minimum reporting and other metadata are typically provided?

Here's a really interesting study getting at the issue of metrics for metadata quality evaluation

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which minimum reporting and other metadata are typically provided?

Here's a really interesting study getting at the issue of metrics for metadata quality evaluation

4/22/13

4/9/13

GSoC 2013 mentors

Hi folks, [ This will be the last mentor message to mailing lists other than phyl...@nescent.org. I

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GSoC 2013 mentors

Hi folks, [ This will be the last mentor message to mailing lists other than phyl...@nescent.org. I

4/9/13

3/26/13

Phyloinformatics Summer of Code projet ideas due Wednesday!

The organization applications for Google Summer of Code are due this Friday. We've been

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Phyloinformatics Summer of Code projet ideas due Wednesday!

The organization applications for Google Summer of Code are due this Friday. We've been

3/26/13

3/23/13

MIAPA Prefix/Domain creation request

I am requesting the prefix MIAPA for the following ontology: - Title: MIAPA Ontology - Short

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MIAPA Prefix/Domain creation request

I am requesting the prefix MIAPA for the following ontology: - Title: MIAPA Ontology - Short

3/23/13

2/19/13

There hasn't been yet. I am going to have to keep effort on this on lower heat for a few weeks,

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There hasn't been yet. I am going to have to keep effort on this on lower heat for a few weeks,

2/19/13

Rutger Vos, … Arlin Stoltzfus5

2/13/13

Annotating trees/MIAPA/the mammal supertree use case

On Feb 13, 2013, at 12:29 PM, Rutger Vos wrote: I'd really like to see the populated spreadsheet,

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Annotating trees/MIAPA/the mammal supertree use case

On Feb 13, 2013, at 12:29 PM, Rutger Vos wrote: I'd really like to see the populated spreadsheet,

2/13/13

Arlin Stoltzfus

2/8/13

Fwd: [bioportal-announce] CFP - 1st International Workshop on Semantics for Biodiversity (S4BioDiv'13) @ ESWC, Montpellier, May 2013

This workshop may be of interest. Begin forwarded message: From: Pierre Larmande <pierre.larmande@

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Fwd: [bioportal-announce] CFP - 1st International Workshop on Semantics for Biodiversity (S4BioDiv'13) @ ESWC, Montpellier, May 2013

This workshop may be of interest. Begin forwarded message: From: Pierre Larmande <pierre.larmande@

2/8/13

12/4/12

Tree Metadata Survey Results & Next Steps (..and Hello!)

** Apologies for cross-posting; I think these results are relevant to both MIAPA and OTOL ** Hi all.

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Tree Metadata Survey Results & Next Steps (..and Hello!)

** Apologies for cross-posting; I think these results are relevant to both MIAPA and OTOL ** Hi all.

12/4/12

10/30/12

Phylo-hackathon, Tucson, AZ, January 2013

Phylogenies! Hacking! Tucson in January! Apply at http://tinyurl.com/PhyloTastic2 An implicit promise

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Phylo-hackathon, Tucson, AZ, January 2013

Phylogenies! Hacking! Tucson in January! Apply at http://tinyurl.com/PhyloTastic2 An implicit promise

10/30/12

Arlin Stoltzfus

10/30/12

Call for Participants in Second Phylotastic Hackathon

Phylogenies! Hacking! Tucson in January! An implicit promise of the Tree of Life project is that,

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Call for Participants in Second Phylotastic Hackathon

Phylogenies! Hacking! Tucson in January! An implicit promise of the Tree of Life project is that,

10/30/12

8/23/12

Fwd: Other: Minimum Information about a Phylogenetic Analysis

(Apologies for cross-posting). I sent the MIAPA metadata survey to evoldir yesterday. 36 responses

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Fwd: Other: Minimum Information about a Phylogenetic Analysis

(Apologies for cross-posting). I sent the MIAPA metadata survey to evoldir yesterday. 36 responses

8/23/12

Elliott Hauser, … Jim Leebens-Mack3

7/26/12

NeXML ISAtab update

Yes! Elliott! it is wonderful to see the progress you have made over the summer! We are refining

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NeXML ISAtab update

Yes! Elliott! it is wonderful to see the progress you have made over the summer! We are refining

7/26/12

Karen Cranston, … Hilmar Lapp3

7/15/12

draft survey about metadata on trees

One thing I just came across that might be useful in terms of tallying preference votes for MIAPA

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draft survey about metadata on trees

One thing I just came across that might be useful in terms of tallying preference votes for MIAPA

7/15/12

6/30/12

Fwd: [opentreeoflife] draft survey about metadata on trees

Begin forwarded message: From: Laura A Katz <lk...@smith.edu> Date: June 30, 2012 1:46:21 PM

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Fwd: [opentreeoflife] draft survey about metadata on trees

Begin forwarded message: From: Laura A Katz <lk...@smith.edu> Date: June 30, 2012 1:46:21 PM

6/30/12

6/25/12

MIAPA NeXML Draft v 0.1

All, I have a rough google document up, evaluating the degree to which Treebase NeXML is able to

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MIAPA NeXML Draft v 0.1

All, I have a rough google document up, evaluating the degree to which Treebase NeXML is able to

6/25/12

6/20/12

Genomics of model organisms and human biology: Insights from the modENCODE Project(it is going on now)

Genomics of model organisms and human biology: Insights from the modENCODE Project (Day 1) http://

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Genomics of model organisms and human biology: Insights from the modENCODE Project(it is going on now)

Genomics of model organisms and human biology: Insights from the modENCODE Project (Day 1) http://

6/20/12

Elliott Hauser, … Rutger Vos4

6/12/12

MIAPA: NeXML --> ISAtab Update

Hi Elliott, Yup, I'm not so sure the code to generate analysis metadata ever made it to the

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MIAPA: NeXML --> ISAtab Update

Hi Elliott, Yup, I'm not so sure the code to generate analysis metadata ever made it to the

6/12/12

6/4/12

MIAPA-ETL: From NeXML to ISAtab Project Update

Refresher: I'm building a bridge between two important data formats, NeXML and ISAtab, to promote

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MIAPA-ETL: From NeXML to ISAtab Project Update

Refresher: I'm building a bridge between two important data formats, NeXML and ISAtab, to promote

6/4/12

Karen Cranston, Hilmar Lapp3

6/2/12

miapa / metadata feedback

Karen - I've added two comments. Specifically, if there's an opportunity here to collaborate

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miapa / metadata feedback

Karen - I've added two comments. Specifically, if there's an opportunity here to collaborate

6/2/12

5/29/12

Fwd: MIAPA ETL update

Dear NeXML and MIAPA communities, Please find my weekly update below. Additional updates: Rutger Vos

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Fwd: MIAPA ETL update

Dear NeXML and MIAPA communities, Please find my weekly update below. Additional updates: Rutger Vos

5/29/12

Elliott Hauser, … Rutger Vos7

5/27/12

Intro: GSOCer Elliott Hauser

Hi Elliott, are you also aware of this spreadsheet with the annotation predicates that occur in the

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Intro: GSOCer Elliott Hauser

Hi Elliott, are you also aware of this spreadsheet with the annotation predicates that occur in the

5/27/12

4/4/12

Google Summer of Code opportunity: flip MIAPA bits, not burgers, over the summer

In case a student interested in a mentored summer remote programming internship is following this

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Google Summer of Code opportunity: flip MIAPA bits, not burgers, over the summer

In case a student interested in a mentored summer remote programming internship is following this

4/4/12

3/24/12

Call for student applications for PhyloSoC 2012

*** Please disseminate widely at your local institutions, including *** *** posting to message and

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Call for student applications for PhyloSoC 2012

*** Please disseminate widely at your local institutions, including *** *** posting to message and

3/24/12

2/21/12

Call for applications: Phylotastic! hackathon at NESCent (June 4 to 8, 2012)

Every year, the number and size of available species phylogenies grows, with the largest trees now

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Call for applications: Phylotastic! hackathon at NESCent (June 4 to 8, 2012)

Every year, the number and size of available species phylogenies grows, with the largest trees now

2/21/12

2/16/12

Phyloinformatics Summer of Code 2012: Call for mentors and project ideas

Over the next 3 weeks NESCent will be putting together our application as a mentoring organization to

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Phyloinformatics Summer of Code 2012: Call for mentors and project ideas

Over the next 3 weeks NESCent will be putting together our application as a mentoring organization to

2/16/12

Rutger Vos, … Hilmar Lapp5

2/9/12

I've known EDAM for quite a while, in fact it came up in CDAO discussions some time ago. The EBI

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I've known EDAM for quite a while, in fact it came up in CDAO discussions some time ago. The EBI

2/9/12

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