linking microbial taxonomy to functional entities

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Rakeshkumar Yadav

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Apr 18, 2020, 11:30:23 AM4/18/20
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Hello, 
I have been trying to obtain data that tells me about the functions assigned to a particular taxonomy. Basically linking taxonomy to function. 
For that, I use different filters in the analysis tab. So for taxonomy, I use ref seq and phylum, then I add another filter of KO and level 1 for the function.
This is how I tried many other combinations, but every time I am getting no hits.

So, I also decrease the cutoff, however, still no success.


Am I doing something wrong?


Please help.




Meagan Maxwell

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Aug 27, 2020, 11:35:56 AM8/27/20
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I experienced a similar issue when attempting to make connections between the RefSeq taxonomic and the Subsystems functional databases. I wanted to specifically view what genes or organisms may affect the multi-drug efflux pump function within the Subsystems database, but I received zero hits when filtering for each taxonomic or functional level. I also would be curious to know whether this is a user error on my part? 

Thank you, 
Meagan
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