Reg: Import CpG_context file to Methylkit

[manju moorthy]

Hi. I am using Bismark pipeline to process my Whole genome BS data. So after running Bismark methylation extract command I got 3 different text files for each context CpG, Chh and Chg. I know we can import the .cov or bam files to Methylkit. But what I specifically want to understand is that, is there any method where I can import the CpG_Context.txt into the Methylkit?

Kindly guide.

[Alexander Blume]

Hi Manju, 

I answered this on GitHub (https://github.com/al2na/methylKit/issues/286). 

Best, 
Alex