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MethPipe is a computational pipeline for analyzing bisulfite sequencing data:
http://smithlabresearch.org/
software/methpipe
MethBase is a reference methylome database:
http://smithlabresearch.org/
software/methbase
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Ian Chang
, …
Andrew Smith
4
8/20/14
Q&A
bsrate 3.0.1 and 3.3.1 have difference of BS conservation rate
Can you respond with a tiny sample of reads after removing duplicates? Maybe 100k of them? That would
unread,
bsrate
Q&A
bsrate 3.0.1 and 3.3.1 have difference of BS conservation rate
Can you respond with a tiny sample of reads after removing duplicates? Maybe 100k of them? That would
8/20/14
Ian Chang
,
Jianghan Qu
2
8/18/14
Q&A
Should I remove duplicates of mapped reads (mr) before using bsrate?
Hi Ian, It is better to remove the duplicates before computing the bisulfite conversion rate,
unread,
bsrate
duplicate-remover
Q&A
Should I remove duplicates of mapped reads (mr) before using bsrate?
Hi Ian, It is better to remove the duplicates before computing the bisulfite conversion rate,
8/18/14