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MethPipe is a computational pipeline for analyzing bisulfite sequencing data: http://smithlabresearch.org/software/methpipe
MethBase is a reference methylome database: http://smithlabresearch.org/software/methbase

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Ian Chang, … Andrew Smith4

8/20/14

bsrate 3.0.1 and 3.3.1 have difference of BS conservation rate

Can you respond with a tiny sample of reads after removing duplicates? Maybe 100k of them? That would

unread,

bsrate 3.0.1 and 3.3.1 have difference of BS conservation rate

Can you respond with a tiny sample of reads after removing duplicates? Maybe 100k of them? That would

8/20/14

Ian Chang, Jianghan Qu2

8/18/14

Should I remove duplicates of mapped reads (mr) before using bsrate?

Hi Ian, It is better to remove the duplicates before computing the bisulfite conversion rate,

unread,

duplicate-remover

Should I remove duplicates of mapped reads (mr) before using bsrate?

Hi Ian, It is better to remove the duplicates before computing the bisulfite conversion rate,

8/18/14

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