Dear Methpipe team,
Hope you are doing well.
I am using your powerful methpipe software and have a stupid question about the methdiff result. The 5th column gives the probability that the methylation level at each given site. Does that mean if the value <= 0.05, that site will be seen as a differential methylated site? For example, in the 4th row below, the value of 5th column is 0.010825, we will see it as a differential methylated site? Thanks for your time and looking forward to your reply. Have a nice day!
Best regards,
Miles