Help with #Error# Sequence './0-Sequences/' file not found.

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radz150193

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May 13, 2020, 1:36:50 AM5/13/20
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I am trying to run metatrans on a single sample. I have added my fastq files to the 0-Seqeunces folder and I have updated the metadata.txt file to include my fastq files. However when I try to run the pipeline I get this error:

```

  File "./0-Software/scripts/getMeta.py", line 190

    print len(mydata[0])

            ^

SyntaxError: invalid syntax

  File "./0-Software/scripts/getMeta.py", line 190

    print len(mydata[0])

            ^

SyntaxError: invalid syntax


 #Error# Sequence './0-Sequences/' file not found.


 #Error# Pipeline exited with error code 1.


 #HELP# An error may lead files in an intermediate state. To re-run the pipeline some folder might be deleted.

 #HELP# Please, read the troubleshooting section of the manual for help.

```


I have triple checked and the fastq files in 0-Sequences and what is listed in the metadata file are identical, has anyone else had this issue?

Giovanna Ventola

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Oct 6, 2020, 3:55:01 AM10/6/20
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I have the same problem.
Do you have solved it?
Thanks
Giovanna

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