Soap issue

[Nasir Abbasi]

I am getting error in Soap. I am not able to figure out the issue

Begin Program SOAPaligner/soap2
Wed Apr  3 16:35:05 2019
Reference: /home/nmabbasi/New_Tools/MetaTrans/tar_files/0-Databases/indexed_soap_db/gg_13_5_with_taxa.fasta.index
Query File a: /home/nmabbasi/New_Tools/MetaTrans/tar_files/1-PROCESSED_SAMPLES/C1JB3ACXX_1_3/3-MAP16S/m3-16S-output/usearch5/C1JB3ACXX_1_3_j_m3-16S.100.000.usearch97.clusterseeds.withcs.fasta
Output File: /home/nmabbasi/New_Tools/MetaTrans/tar_files/1-PROCESSED_SAMPLES/C1JB3ACXX_1_3/3-MAP16S/m3-16S-output/soap2/C1JB3ACXX_1_3_j_m3-16S.100.000.aln.gg135.soap
             /home/nmabbasi/New_Tools/MetaTrans/tar_files/1-PROCESSED_SAMPLES/C1JB3ACXX_1_3/3-MAP16S/m3-16S-output/soap2/C1JB3ACXX_1_3_j_m3-16S.100.000.un.gg135.soap.fasta
Load Index Table ...
DNALoadPacked() : Cannot open inputFileName!

This particulqr file seem to be cqusing problem

/home/nmabbasi/New_Tools/MetaTrans/tar_files/0-Databases/indexed_soap_db/gg_13_5_with_taxa.fasta.index

There is no gg_13_5_with_taxa.fasta.index file the database folder which come with this tool.

Let me know how can i solve this issue.

[metatr...@gmail.com]

Hi Nassir,

Your issues seem related to software versions. MetaTrans was tested under Ubuntu 14.04 and CentOS, but unfortunately

its maintenance  is discontinued. So far we can not offer further support on newer versions.

We can only recommend you to check the versions that were used in this link: http://metatrans.org/#requirements

Sorry for the inconvenience

Greetings