INFO

[Giovanna Ventola]

Hi,

I'm Giovanna and I'm running metatrans; but I have a problem:

./metatrans

#Checking pipeline files' integrity (Date: '05-10-20' Time: '13h:56m:52s CEST')...

#Checking sequence files' integrity (Date: '05-10-20' Time: '13h:56m:53s CEST')...
  File "./0-Software/scripts/getMeta.py", line 190
    print len(mydata[0])
          ^
SyntaxError: invalid syntax
  File "./0-Software/scripts/getMeta.py", line 190
    print len(mydata[0])
          ^
SyntaxError: invalid syntax

 #Error# Sequence './0-Sequences/' file not found.

 #Error# Pipeline exited with error code 1.

 #HELP# An error may lead files in an intermediate state. To re-run the pipeline some folder might be deleted.
 #HELP# Please, read the troubleshooting section of the manual for help. 

I have 12 fastq in 0-Sequences.

Can I solve this problem?

Thanks

Giovanna

Dott.ssa Giovanna Maria Ventola, Bioinformatics PhD

Phd in Bioinformatics

Master’s Degree in Biology

Bioinformatician in Genomix4Life S.r.l.

Genomix4Life Srl

c/o Laboratorio di Medicina Molecolare e Genomica

Campus di Medicina e Chirurgia, Prefab. 2

Via S. Allende, 1 - 84081 Baronissi (SA) - Italy

Mobile: +39 320 9272 160

e-mail: giovanna...@genomix4life.com or giovannav...@gmail.com