Metatrans running failure

[Haoya TONG]

Dear Sir/Madam,

I kept getting error when ran Metatrans. I’ve attached the log files as well as my metatrans file here. My samples are relatively big thus firstly I used the compressed ones in the sequence folder and it failed. Then I unzip the files and reran, but failed again. My samples are ended with “fq” and I thought it might cause the problems, thus I changed “fq” into “fastq”, but still didn’t work. Thus I have no idea what cause the error. Could you please help figure it out?

Thank you so much and have a nice day!

Best,

Haoya Tong

[Metatrans pipeline]

Dear Haoya,

Unfortunately we are no longer offering support for new environments. The error log

regarding the "len" function in python suggests an update in python libraries, as that function

did not raise any issue in the past. So far, we can only recommend you to run the pipeline in

a compatible environment like Ubuntu 12/14.04. If you are a CentOS/RedHat user please check

the threads related to that environment within this forum. You can check the versions used for

the development of this tool here.

Greetings