Viruses in clade_profiles missing in default output

[Michael McLaren]

I noticed that viruses at high abundance in the clade_profiles output are often missing in the default (rel_ab) output. For example, the following virus with high abundance for all its markers is completely absent in the rel_ab profile.

k__Viruses|p__Viruses_noname|c__Viruses_noname|o__Viruses_noname|f__Viruses_noname|g__Viruses_noname|s__Phage_Gifsy_2|t__PRJNA32271 1413.6776661884267 1100.0 1128.5140562248996 1169.7530864197531 1217.0212765957447 2072.239422084623 1258.1453634085212 1092.039800995025 1165.1651651651653 1211.6104868913858 937.1980676328502 1175.287356321839 1500.0 1624.4979919678715 1089.6358543417366 666.6666666666666 1229.559748427673 1269.487750556793 1958.3333333333333 1344.0 1295.5555555555557 1285.6474988312295 1163.9566395663956 1276.8959435626102 1310.8660130718954 1398.5788113695091 1538.2830626450116

Is there some additional filtering that is taking place that would discard such viruses? Thanks!

[Katie Lennard]

Hi Michael, 

Did you ever figure this out? 

Regards,

Katie.

[Michael McLaren]

Hi Katie, 

No, I didn't; I stopped looking into this as it ended up not mattering for the project I was working on, so unfortunately don't have anything to add.