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I used prefetch tool of "SRA-TOOLKIT-2.9.6" was used to download SRR11048974 (.sra file). It was converted to .fastq file by fastq-dump of SRA-TOOLKIT. this .fastq file was analysed by "MetaPhlAn version 2.96.1 (02 Feb 2020)". But both the "SRR11048974.fastq.bowtie2out.txt" and profile "SRR11048974.txt" files are not giving expected result. ( I have attached relevent files after compressing it due to their large size; please extract to see). Facing same output for many other files also.