Most of what I know about reverse mathematics is what I see in a
quick look at the wikipedia article, so I'm not sure the following
covers it especially well, but I'll try:
1. You are correct that "This theorem was proved from axioms" can
be used to keep track of which axioms were used in a proof. In the
Metamath Proof Explorer this is most developed for the axiom of
choice, the axiom of regularity, and perhaps a few of the
predicate logic axioms. However what we have done so far is mostly
about omitting axioms from ZFC more so than adding axioms to
something like RCA0.
2. Although there is a bit of a start at doing things with type theory at http://us.metamath.org/holuni/mmhol.html it hasn't gotten as much attention as ZF or IZF. I don't know how fully developed it is, how the type theory there compares with what reverse mathematics generally uses (which I gather is usually based on second order arithmetic?), etc.
3. There is a decent amount of development of IZF at
http://us.metamath.org/ileuni/mmil.html (up to the construction of
the real numbers and existence of square roots, basically).
However, I gather IZF is pretty strong by the standards of these
things. There's a little CZF there as well but I'm not sure that
it weak enough to serve as a base theory.
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