I imported the source code into eclipse and compiled it there. Regarding the JSON library, I extracted the package org.json from the mmj2.jar file, because I didn't find such a library within the mmj2.zip which I downloaded from the metamath web site (the folder ...\mmj2\lib\JSON-java\org\json is empty!). Where did you find the org.json-20161124.jar? I remember that I also got errors when trying to use other (versions of) JSON libraries.
... as I said before, I extracted the package org.json from the mmj2.jar file and used this as JSON library
Regards Filip