About Pathoscope, library produce an empty files

[MD.Shaminur Rahman]

I am very new in coding.

I am trying to use pathoscope  but when the library is going to build, there are an empty file, 

Details error are below:

 I am trying to build a target library without MySQL database

Command: pathoscope LIB -genomeFile ./data/nt.fasta -taxonIds 10239 --subTax -outPrefix virus

(wget ftp://ftp.ncbi.nih.gov/blast/db/FASTA/nt.gz

$ gunzip -dc nt.gz > nt.fasta) was ready in data file.

The details output like:

Running without mySQLdb library
--2020-05-03 06:34:47--  ftp://ftp.ncbi.nih.gov/pub/taxonomy/gi_taxid_nucl.dmp.gz
           => ‘gi_taxid_nucl.dmp.gz’
Resolving ftp.ncbi.nih.gov (ftp.ncbi.nih.gov)... 130.14.250.13, 2607:f220:41e:250::7
Connecting to ftp.ncbi.nih.gov (ftp.ncbi.nih.gov)|130.14.250.13|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done.    ==> PWD ... done.
==> TYPE I ... done.  ==> CWD (1) /pub/taxonomy ... done.
==> SIZE gi_taxid_nucl.dmp.gz ... 1811025080
==> PASV ... done.    ==> RETR gi_taxid_nucl.dmp.gz ... done.
Length: 1811025080 (1.7G) (unauthoritative)
gi_taxid_nucl.dmp.gz    100%[============================>]   1.69G  79.1MB/s    in 18s    
2020-05-03 06:35:05 (97.5 MB/s) - ‘gi_taxid_nucl.dmp.gz’ saved [1811025080]
cd ./ncbiDB; gunzip gi_taxid_nucl.dmp.gz
--2020-05-03 06:36:15--  ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz
           => ‘taxdump.tar.gz’
Resolving ftp.ncbi.nih.gov (ftp.ncbi.nih.gov)... 130.14.250.7, 2607:f220:41e:250::7
Connecting to ftp.ncbi.nih.gov (ftp.ncbi.nih.gov)|130.14.250.7|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done.    ==> PWD ... done.
==> TYPE I ... done.  ==> CWD (1) /pub/taxonomy ... done.
==> SIZE taxdump.tar.gz ... 51973180
==> PASV ... done.    ==> RETR taxdump.tar.gz ... done.
Length: 51973180 (50M) (unauthoritative)
taxdump.tar.gz                      100%[=================================================================>]  49.57M  50.7MB/s    in 1.0s    
2020-05-03 06:36:17 (50.7 MB/s) - ‘taxdump.tar.gz’ saved [51973180]
cd ./ncbiDB; tar zxvf taxdump.tar.gz
citations.dmp
delnodes.dmp
division.dmp
gencode.dmp
merged.dmp
names.dmp
nodes.dmp
gc.prt
readme.txt
storing taxon tree to hash memory...
done
traversing phylogeny tree to get sub taxonomy ids...
done
printing fa file ...
done
find max gi...
done!
converting gi to taxon_id...
1608820542
done!
selecting some reference genome sequences in [./data/nt.fasta]...
check ./virus_ti.fa
done.

#The virus_ti.fa file is empty. 

I am trying to access google groups (patho...@googlegroups.com) but I am unable to find out it on google groups.

Thanks in advance