Thanks for your report, Lewis! Your crash was caused by a bug that was triggered if you have a morphological data file with annotations for the character state names, and you deleted a character. For version 4, we had made some deep changes to make character deletion thousands of times faster, for genomic data, but we forgot to check it for annotated states.
I think we have a patch. Could you do the following to test it?
Download the file 4.02-Fix for DeletingCharsMorphWAnnot.zip
Unzip it, and you will find a ReadMe.txt file, with instructions.
Does that fix your crash? If it does, we'll post the patch alongside the 4.02 release on GitHub.
Best wishes,
Wayne