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MEME Suite Q&A

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Welcome to the MEME Suite question and answer forum.

As of 12PM PST Nov. 3 2025 We've completed the restoration of the MEME Suite web site and it is available for public use again.

The latest version of the MEME Suite can be used online at http://meme-suite.org/.

You might get a more immediate response by sending an email to the support address meme-suite@uw.edu as more people from the team check that address and some of them even work on weekends...

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6/29/18

dreme error when installing meme on ubuntu (making docker image)

Hi, I am getting an error in the tests for dreme when installing meme. I am trying to install meme as

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dreme error when installing meme on ubuntu (making docker image)

Hi, I am getting an error in the tests for dreme when installing meme. I am trying to install meme as

6/29/18

Robert Leach, cegrant2

3/5/18

How to weight sequences in dreme?

I'm afraid any motif that involves an inexact match is going to be washed out in your data. With

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motif_discovery

How to weight sequences in dreme?

I'm afraid any motif that involves an inexact match is going to be washed out in your data. With

3/5/18

i...@alum.mit.edu, cegrant2

12/5/17

DREME -maxk option in MEME-ChIP

No, the -maxk option is only available for the stand alone version of DREME. The only DREME

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DREME -maxk option in MEME-ChIP

No, the -maxk option is only available for the stand alone version of DREME. The only DREME

12/5/17

Vanessa, cegrant5

11/30/17

installation errors

Glad you were able to figue it out! Let us know if you run into other problems.

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installation errors

Glad you were able to figue it out! Let us know if you run into other problems.

11/30/17

Jaime Alvarez Benayas

12/1/16

Dreme - TypeError: 'PWM' object is not iterable. Possible solution.

Hello, I am getting the following error with DREME meme_4.11.2 patch 2: File "/shared/sudlab1/

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Dreme - TypeError: 'PWM' object is not iterable. Possible solution.

Hello, I am getting the following error with DREME meme_4.11.2 patch 2: File "/shared/sudlab1/

12/1/16

Jennifer I, CharlesEGrant3

6/20/16

DREME and FIMO interpretation

Thanks for the detailed explanation!

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DREME and FIMO interpretation

Thanks for the detailed explanation!

6/20/16

Raymond Wan, CharlesEGrant7

4/28/16

Dreme masking and sequence length

Hi Charles, On Tuesday, 26 April 2016 05:43:32 UTC+8, CharlesEGrant wrote: Hi Ray, What I was

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motif_discovery

Dreme masking and sequence length

Hi Charles, On Tuesday, 26 April 2016 05:43:32 UTC+8, CharlesEGrant wrote: Hi Ray, What I was

4/28/16

4/17/18

How do I use MEME suite for searching for motifs?

Note that this post only covers some of the most commonly used tools in the MEME Suite but then if

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motif_discovery

How do I use MEME suite for searching for motifs?

Note that this post only covers some of the most commonly used tools in the MEME Suite but then if

4/17/18

DJEKIDEL MOHAMED NADHIR, James Johnson2

7/8/13

Dreme always crashing

I think the error message means that it couldn't run GhostScript. You can probably fix it by

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Dreme always crashing

I think the error message means that it couldn't run GhostScript. You can probably fix it by

7/8/13

James Johnson, Tonatiuh Pena Centeno2

2/1/13

Re: DREME, DEME and discriminative MEME with -psp

Thanks a lot, your explanation was very helpful!!! Tonatiuh

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motif_discovery

Re: DREME, DEME and discriminative MEME with -psp

Thanks a lot, your explanation was very helpful!!! Tonatiuh

2/1/13

James Johnson, CharlesEGrant2

12/10/12

Re: meme-chip import site fail

The python version is 2.4.3, As noted in the MEME installation guide the MEME tools require a version

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Re: meme-chip import site fail

The python version is 2.4.3, As noted in the MEME installation guide the MEME tools require a version

12/10/12

CharlesEGrant, … Hima vyshnavi.a.6

6/11/14

'make test' fails in DREME

Hi Hima, Could you upload a copy of the 'config.log' file from the root directory of your

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'make test' fails in DREME

Hi Hima, Could you upload a copy of the 'config.log' file from the root directory of your

6/11/14

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