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James Johnson
Dec 2, 2012, 9:31:09 PM12/2/12
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CentriMo works with any FASTA file which has sequences with all the same length however most ChIP-seq datasets need regions of at least 300bp for the central motifs to be obvious. Sequences of 500bp makes them very obvious. I would expect 150bp to be too small for ChIP-seq data but it of course depends on your data.
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