meme process died with signal 11, without coredump

[shuailong zheng]

Log::Log4perl configuration looks suspicious: No loggers defined at /work/home/xiang1996/miniconda3/envs/meme/lib/site_perl/5.26.2/Log/Log4perl/Config.pm line 325.
Starting getsize: getsize memechip_example_output_files11/C1_peaks.fa 1> $metrics
getsize ran successfully in 1.221798 seconds
Starting fasta-most: fasta-most -min 50 < memechip_example_output_files11/C1_peaks.fa 1> $metrics
fasta-most ran successfully in 0.272887 seconds
Starting fasta-center: fasta-center -dna -len 100 < memechip_example_output_files11/C1_peaks.fa 1> memechip_example_output_files11/seqs-centered
fasta-center ran successfully in 0.52905 seconds
Starting fasta-shuffle-letters: fasta-shuffle-letters memechip_example_output_files11/seqs-centered memechip_example_output_files11/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
fasta-shuffle-letters ran successfully in 0.116403 seconds
Starting fasta-get-markov: fasta-get-markov -nostatus -nosummary -dna -m 1 memechip_example_output_files11/C1_peaks.fa memechip_example_output_files11/background
fasta-get-markov ran successfully in 0.305264 seconds
Starting meme: meme memechip_example_output_files11/seqs-centered -oc memechip_example_output_files11/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile memechip_example_output_files11/background -dna -p 6 -revcomp -nostatus
[login03:21693] *** Process received signal ***
[login03:21693] Signal: Segmentation fault (11)
[login03:21693] Signal code: Address not mapped (1)
[login03:21693] Failing at address: (nil)
[login03:21693] [ 0] /lib64/libpthread.so.0(+0xf5d0)[0x2b9fc1c145d0]
[login03:21693] *** End of error message ***
meme process died with signal 11, without coredump
Starting dreme-py3: dreme-py3 -verbosity 1 -oc memechip_example_output_files11/dreme_out -png -dna -p memechip_example_output_files11/seqs-centered -n memechip_example_output_files11/seqs-shuffled

[cegrant]

We'll need a bit more information to assist with this. I assume you are running MEME=ChIP on a local computer? It would be helpful if you could provide the exact command line you used and if possible, forward us copies of the input files. It would also be helpful to know if the build and installation showed any errors. Are you able to run other MEME-Suite commands without error?