dreme error when installing meme on ubuntu (making docker image)

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Adam Whitney

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Jun 29, 2018, 3:04:08 AM6/29/18

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Hi,

I am getting an error in the tests for dreme when installing meme. I am trying to install meme as part of a docker image to run cmonkey. Since cmonkey is compatible only with older versions of meme, I am installing meme_4.11.3. I know many errors are a result of incompatible python versions, and I have tried with both python 3 and python 2. Strangely, no logs are created during the install process, so I can't post those (if you have an idea about how to make the logs generate, please share).

Here is Dockerfile code and output from the configure and make process that I think is relevant, if more would be helpful I can post that too.

Thanks,

Adam

Dockerfile:

FROM ubuntu:latest

## Install dependencies
# basics
RUN apt-get update && \
    apt-get upgrade -y && \
    apt-get install build-essential -y && \
    apt-get install zlib1g-dev -y && \
    apt-get install -y libexpat1-dev && \
    apt-get install -y libxml2 && \
    apt-get install -y libxslt-dev && \
    apt-get install -y ghostscript && \
    apt-get install -y musl-dev && \
    apt-get install -y file && \
    apt-get install -y libhtml-parser-perl && \
    apt-get install -y libjson-perl && \
    apt-get install -y libxml-simple-perl

# python
#https://gist.github.com/tiagocardosos/5f0d2a5edaccb2f719baacf134cd790e
RUN apt-get install software-properties-common -y && \
    apt-get install python2.7 libpython2.7 -y && \
    apt-get install python3.6 libpython3.6 -y && \
    update-alternatives --install /usr/bin/python python /usr/bin/python3.6 1 && \
    update-alternatives --install /usr/bin/python3 python3 /usr/bin/python3.6 1 && \
    rm /usr/bin/python3 && \
    ln -s python3.6 /usr/bin/python3
RUN rm /usr/bin/python && \
    ln -s python2.7 /usr/bin/python

# perl modules for meme
RUN apt-get install libssl-dev curl -y
RUN curl -L https://cpanmin.us | perl - App::cpanminus
RUN cpanm --self-upgrade
RUN cpanm XML::Compile::SOAP11
RUN cpanm XML::Compile::WSDL11
RUN cpanm XML::Compile::Transport::SOAPHTTP
RUN cpanm HTML::Template
RUN cpanm Log::Log4perl
RUN cpanm Math::CDF

# meme_4
ADD http://meme-suite.org/meme-software/4.11.3/meme_4.11.3_1.tar.gz meme_4.11.3_1.tar.gz
RUN tar zxf meme_4.11.3_1.tar.gz
RUN cd meme_4.11.3 && \
     ./configure --prefix=$HOME/meme \
        --with-url=http://meme-suite.org \
        --enable-build-libxml2 \
        --enable-build-libxslt \
        --with-python=/usr/bin/python; \
     make; \
     make test; \
     make install
ENV PATH /root/meme/bin:$PATH

python + perl info

root@d3f7271b2faa:~# which python

/usr/bin/python

root@d3f7271b2faa:~# python --version

Python 2.7.15rc1

root@d3f7271b2faa:~# which perl

/usr/bin/perl

root@d3f7271b2faa:~# perl -version

This is perl 5, version 26, subversion 1 (v5.26.1) built for x86_64-linux-gnu-thread-multi

(with 63 registered patches, see perl -V for more detail)

Make output

Step 16/17 : RUN cd meme_4.11.3 && ./configure --prefix=$HOME/meme --with-url=http://meme-suite.org --enable-build-libxml2 --enable-build-libxslt --with-python=/usr/bin/python; make; make test; make install

---> Running in f7b25e25f0e2

checking for a BSD-compatible install... /usr/bin/install -c

checking whether build environment is sane... yes

checking for a thread-safe mkdir -p... /bin/mkdir -p

checking for gawk... no

checking for mawk... mawk

checking whether make sets $(MAKE)... yes

checking whether make supports nested variables... yes

checking whether make supports nested variables... (cached) yes

checking for gcc... gcc

checking whether the C compiler works... yes

checking for C compiler default output file name... a.out

checking for suffix of executables...

checking whether we are cross compiling... no

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking whether gcc understands -c and -o together... yes

checking for style of include used by make... GNU

checking dependency style of gcc... gcc3

checking whether gcc and cc understand -c and -o together... yes

checking build system type... x86_64-unknown-linux-gnu

checking host system type... x86_64-unknown-linux-gnu

checking how to print strings... printf

checking for a sed that does not truncate output... /bin/sed

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for fgrep... /bin/grep -F

checking for ld used by gcc... /usr/bin/x86_64-linux-gnu-ld

checking if the linker (/usr/bin/x86_64-linux-gnu-ld) is GNU ld... yes

checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B

checking the name lister (/usr/bin/nm -B) interface... BSD nm

checking whether ln -s works... yes

checking the maximum length of command line arguments... 1572864

checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop

checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop

checking for /usr/bin/x86_64-linux-gnu-ld option to reload object files... -r

checking for objdump... objdump

checking how to recognize dependent libraries... pass_all

checking for dlltool... no

checking how to associate runtime and link libraries... printf %s\n

checking for ar... ar

checking for archiver @FILE support... @

checking for strip... strip

checking for ranlib... ranlib

checking command to parse /usr/bin/nm -B output from gcc object... ok

checking for sysroot... no

checking for a working dd... /bin/dd

checking how to truncate binary pipes... /bin/dd bs=4096 count=1

checking for mt... no

checking if : is a manifest tool... no

checking how to run the C preprocessor... gcc -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for dlfcn.h... yes

checking for objdir... .libs

checking if gcc supports -fno-rtti -fno-exceptions... no

checking for gcc option to produce PIC... -fPIC -DPIC

checking if gcc PIC flag -fPIC -DPIC works... yes

checking if gcc static flag -static works... yes

checking if gcc supports -c -o file.o... yes

checking if gcc supports -c -o file.o... (cached) yes

checking whether the gcc linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes

checking whether -lc should be explicitly linked in... no

checking dynamic linker characteristics... GNU/Linux ld.so

checking how to hardcode library paths into programs... immediate

checking whether stripping libraries is possible... yes

checking if libtool supports shared libraries... yes

checking whether to build shared libraries... yes

checking whether to build static libraries... yes

checking whether make sets $(MAKE)... (cached) yes

checking for ld... /usr/bin/x86_64-linux-gnu-ld -m elf_x86_64

checking for sed... (cached) /bin/sed

checking for sendmail... /usr/lib/sendmail

checking for perl... /usr/bin/perl

checking for python... /usr/bin/python

checking for python3... (cached) /usr/bin/python

checking for convert... no

checking for gs... /usr/bin/gs

checking for xml2-config... /usr/bin/xml2-config

checking for xslt-config... /usr/bin/xslt-config

checking for ant... no

checking for isnan, sqrt, log, exp, fabs, pow, floor, ceil in -lm... yes

checking for compress in -lz... yes

checking for ANSI C header files... (cached) yes

checking for sys/wait.h that is POSIX.1 compatible... yes

checking arpa/inet.h usability... yes

checking arpa/inet.h presence... yes

checking for arpa/inet.h... yes

checking ctype.h usability... yes

checking ctype.h presence... yes

checking for ctype.h... yes

checking fcntl.h usability... yes

checking fcntl.h presence... yes

checking for fcntl.h... yes

checking limits.h usability... yes

checking limits.h presence... yes

checking for limits.h... yes

checking netdb.h usability... yes

checking netdb.h presence... yes

checking for netdb.h... yes

checking netinet/in.h usability... yes

checking netinet/in.h presence... yes

checking for netinet/in.h... yes

checking for stdlib.h... (cached) yes

checking for string.h... (cached) yes

checking for strings.h... (cached) yes

checking sys/socket.h usability... yes

checking sys/socket.h presence... yes

checking for sys/socket.h... yes

checking sys/time.h usability... yes

checking sys/time.h presence... yes

checking for sys/time.h... yes

checking for unistd.h... (cached) yes

checking for an ANSI C-conforming const... yes

checking for stdbool.h that conforms to C99... yes

checking for _Bool... yes

checking for pid_t... yes

checking for size_t... yes

checking vfork.h usability... no

checking vfork.h presence... no

checking for vfork.h... no

checking for fork... yes

checking for vfork... yes

checking for working fork... yes

checking for working vfork... (cached) yes

checking for stdlib.h... (cached) yes

checking for GNU libc compatible malloc... yes

checking for stdlib.h... (cached) yes

checking for GNU libc compatible realloc... yes

checking return type of signal handlers... void

checking whether lstat correctly handles trailing slash... yes

checking whether stat accepts an empty string... no

checking for floor... yes

checking for getcwd... yes

checking for gethostbyname... yes

checking for isascii... yes

checking for memset... yes

checking for pow... yes

checking for rint... yes

checking for socket... yes

checking for sqrt... yes

checking for strchr... yes

checking for strcspn... yes

checking for strdup... yes

checking for strspn... yes

checking for strstr... yes

checking for strlcpy... no

checking for mpicc... no

checking for openmpicc... no

checking for mpcc... no

checking for mpirun... no

checking for openmpirun... no

checking for perl... (cached) /usr/bin/perl

checking for python3... /usr/bin/python3

checking for convert... no

checking for gs... (cached) /usr/bin/gs

checking that generated files are newer than configure... done

configure: creating ./config.status

config.status: creating Makefile

config.status: creating doc/Makefile

config.status: creating doc/css/Makefile

config.status: creating doc/examples/Makefile

config.status: creating doc/examples/compute_prior_dist_example_output_files/Makefile

config.status: creating doc/examples/sample_opal_scripts/Makefile

config.status: creating doc/images/Makefile

config.status: creating doc/js/Makefile

config.status: creating etc/Makefile

config.status: creating src/filters/Makefile

config.status: creating src/filters/purge/Makefile

config.status: creating src/filters/dust/Makefile

config.status: creating scripts/Makefile

config.status: creating src/Makefile

config.status: creating src/libxml2/Makefile

config.status: creating src/libxml2/include/Makefile

config.status: creating src/libxml2/include/libxml/Makefile

config.status: creating src/libxslt/Makefile

config.status: creating src/libexslt/Makefile

config.status: creating src/parallel/Makefile

config.status: creating tests/Makefile

config.status: creating tests/ame/Makefile

config.status: creating tests/centrimo/Makefile

config.status: creating tests/clustalw2fasta/Makefile

config.status: creating tests/common/Makefile

config.status: creating tests/common/motif.crp0/Makefile

config.status: creating tests/common/motif.Puf3p/Makefile

config.status: creating tests/create-priors/Makefile

config.status: creating tests/draw-mhmm/Makefile

config.status: creating tests/dreme/Makefile

config.status: creating tests/fasta-center/Makefile

config.status: creating tests/fimo/Makefile

config.status: creating tests/glam2/Makefile

config.status: creating tests/glam2scan/Makefile

config.status: creating tests/gomo/Makefile

config.status: creating tests/mast/Makefile

config.status: creating tests/mcast/Makefile

config.status: creating tests/meme/Makefile

config.status: creating tests/mhmm/Makefile

config.status: creating tests/mhmms/Makefile

config.status: creating tests/mhmmscan/Makefile

config.status: creating tests/motiph/Makefile

config.status: creating tests/psp-gen/Makefile

config.status: creating tests/qvalue/Makefile

config.status: creating tests/scaffold/Makefile

config.status: creating tests/spamo/Makefile

config.status: creating tests/scripts/Makefile

config.status: creating tests/tomtom/Makefile

config.status: creating tests/web/Makefile

config.status: creating config.h

config.status: executing depfiles commands

config.status: executing libtool commands

configure: All required and optional Perl modules were found.

========================

Configuration parameters

========================

Install path: /root/meme

Install UID:

Version: 4.11.3

C compiler: gcc

C compiler flags: -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3

Linker: /usr/bin/x86_64-linux-gnu-ld -m elf_x86_64

Special Libs: -lz -lm

MPICC gcc

MPIRUN

MPI_CMD

MPIINC

MPILIBDIR

MPIFLAGS

MEME URL: http://meme-suite.org

PREVIOUS VERSION URL:

SERVER CONTACT:

DEVELOPER CONTACT: meme-...@uw.edu

GO-SERVER URL: http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO_TERM_ID

PERL: /usr/bin/perl

PYTHON: /usr/bin/python

PYTHON3: /usr/bin/python3

CONVERT:

GHOSTSCRIPT: /usr/bin/gs

BUILD LIBXML2: yes

LIBXML2 compiler flags: -I${top_srcdir}/src/libxml2/include

LIBXML2 libs: ${top_builddir}/src/libxml2/libxml2.la

BUILD LIBXSLT: yes

LIBXSLT compiler flags: -I${top_srcdir}/src/

LIBXSLT libs: ${top_builddir}/src/libxslt/libxslt.la

MEME DB: ${prefix}/db

MEME LOGS: ${prefix}/LOGS

MEME TEMP FILES:

OPAL URL: no

OPAL DEPLOY DIRECTORY:

Run the following commands to compile, test and install meme:

make

make test

make install

/bin/sed -e 's%@catalina.home@%%' -e 's%@version@%4.11.3%' -e 's%@site.url@%http://meme-suite.org%' -e 's%@site.services@%no%' -e 's%@site.DN@%%' -e 's%@site.contact@%%' -e 's%@developer.contact@%meme-...@uw.edu%' -e 's%@expiry@%4%' -e 's%@bin.dir@%/root/meme/bin%' -e 's%@etc.dir@%/root/meme/etc%' -e 's%@lib.dir@%/root/meme/lib%' -e 's%@db.dir@%/root/meme/db%' -e 's%@sendmail@%/usr/lib/sendmail%' -e 's%@quota@%%' MemeSuite.properties.in > MemeSuite.properties

make all-recursive

make[1]: Entering directory '/meme_4.11.3'

Making all in src

make[2]: Entering directory '/meme_4.11.3/src'

echo '#define MEME_DIR "/root/meme"' >dir.h

echo '#define ETC_DIR "/root/meme/etc" ' >> dir.h

echo '#define BIN_DIR "/root/meme/bin" ' >> dir.h

echo '#define TEMP_DIR "" ' >> dir.h

echo '#define REVISION "c13e15f35e38483381a6e8a363f9137e303c0765"' > projrel.h

echo '#define ARCHIVE_DATE "Sat Mar 11 20:16:08 2017 -0800"' >> projrel.h

make all-recursive

make[3]: Entering directory '/meme_4.11.3/src'

Making all in filters

make[4]: Entering directory '/meme_4.11.3/src/filters'

Making all in purge

make[5]: Entering directory '/meme_4.11.3/src/filters/purge'

depbase=`echo afnio.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\

gcc -DHAVE_CONFIG_H -I. -I../../.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT afnio.o -MD -MP -MF $depbase.Tpo -c -o afnio.o afnio.c &&\

mv -f $depbase.Tpo $depbase.Po

depbase=`echo alphabet.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\

gcc -DHAVE_CONFIG_H -I. -I../../.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT alphabet.o -MD -MP -MF $depbase.Tpo -c -o alphabet.o alphabet.c &&\

mv -f $depbase.Tpo $depbase.Po

depbase=`echo block.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\

gcc -DHAVE_CONFIG_H -I. -I../../.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT block.o -MD -MP -MF $depbase.Tpo -c -o block.o block.c &&\

mv -f $depbase.Tpo $depbase.Po

depbase=`echo dheap.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\

gcc -DHAVE_CONFIG_H -I. -I../../.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT dheap.o -MD -MP -MF $depbase.Tpo -c -o dheap.o dheap.c &&\

mv -f $depbase.Tpo $depbase.Po

depbase=`echo gblast.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\

gcc -DHAVE_CONFIG_H -I. -I../../.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT gblast.o -MD -MP -MF $depbase.Tpo -c -o gblast.o gblast.c &&\

mv -f $depbase.Tpo $depbase.Po

gblast.c: In function 'MakeGBlast':

gblast.c:110:2: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for(c=0; c <= nAlpha(A); c++) free(best[c]); free(best);

^~~

gblast.c:110:47: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for(c=0; c <= nAlpha(A); c++) free(best[c]); free(best);

^~~~

depbase=`echo karlin.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\

gcc -DHAVE_CONFIG_H -I. -I../../.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT karlin.o -MD -MP -MF $depbase.Tpo -c -o karlin.o karlin.c &&\

mv -f $depbase.Tpo $depbase.Po

depbase=`echo mheap.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\

gcc -DHAVE_CONFIG_H -I. -I../../.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT mheap.o -MD -MP -MF $depbase.Tpo -c -o mheap.o mheap.c &&\

mv -f $depbase.Tpo $depbase.Po

depbase=`echo mlist.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\

gcc -DHAVE_CONFIG_H -I. -I../../.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT mlist.o -MD -MP -MF $depbase.Tpo -c -o mlist.o mlist.c &&\

mv -f $depbase.Tpo $depbase.Po

depbase=`echo pairaln.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\

gcc -DHAVE_CONFIG_H -I. -I../../.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT pairaln.o -MD -MP -MF $depbase.Tpo -c -o pairaln.o pairaln.c &&\

mv -f $depbase.Tpo $depbase.Po

depbase=`echo pmain.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\

gcc -DHAVE_CONFIG_H -I. -I../../.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT pmain.o -MD -MP -MF $depbase.Tpo -c -o pmain.o pmain.c &&\

mv -f $depbase.Tpo $depbase.Po

depbase=`echo purge.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\

gcc -DHAVE_CONFIG_H -I. -I../../.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT purge.o -MD -MP -MF $depbase.Tpo -c -o purge.o purge.c &&\

mv -f $depbase.Tpo $depbase.Po

depbase=`echo random.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\

gcc -DHAVE_CONFIG_H -I. -I../../.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT random.o -MD -MP -MF $depbase.Tpo -c -o random.o random.c &&\

mv -f $depbase.Tpo $depbase.Po

depbase=`echo seqset.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\

gcc -DHAVE_CONFIG_H -I. -I../../.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT seqset.o -MD -MP -MF $depbase.Tpo -c -o seqset.o seqset.c &&\

mv -f $depbase.Tpo $depbase.Po

depbase=`echo sequence.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\

gcc -DHAVE_CONFIG_H -I. -I../../.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT sequence.o -MD -MP -MF $depbase.Tpo -c -o sequence.o sequence.c &&\

mv -f $depbase.Tpo $depbase.Po

sequence.c: In function 'RandomizeSeq':

sequence.c:235:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation]

if(E->info!=NULL)free(E->info); E->info = NULL; return E;

sequence.c:235:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'

if(E->info!=NULL)free(E->info); E->info = NULL; return E;

sequence.c: In function 'ShuffleSeq':

sequence.c:290:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation]

if(E->info!=NULL)free(E->info); E->info = NULL;

sequence.c:290:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'

if(E->info!=NULL)free(E->info); E->info = NULL;

sequence.c: In function 'ShuffleSeq2':

sequence.c:309:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation]

if(E->info!=NULL)free(E->info); E->info = NULL;

sequence.c:309:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'

if(E->info!=NULL)free(E->info); E->info = NULL;

/bin/bash ../../../libtool --tag=CC --mode=link gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o purge afnio.o alphabet.o block.o dheap.o gblast.o karlin.o mheap.o mlist.o pairaln.o pmain.o purge.o random.o seqset.o sequence.o -lm -lz -lm

libtool: link: gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o purge afnio.o alphabet.o block.o dheap.o gblast.o karlin.o mheap.o mlist.o pairaln.o pmain.o purge.o random.o seqset.o sequence.o -lz -lm

make[5]: Leaving directory '/meme_4.11.3/src/filters/purge'

...

libtool: link: ar cru .libs/libxml2.a .libs/libxml2_la-chvalid.o .libs/libxml2_la-debugXML.o .libs/libxml2_la-dict.o .libs/libxml2_la-encoding.o .libs/libxml2_la-entities.o .libs/libxml2_la-error.o .libs/libxml2_la-globals.o .libs/libxml2_la-hash.o .libs/libxml2_la-HTMLparser.o .libs/libxml2_la-HTMLtree.o .libs/libxml2_la-list.o .libs/libxml2_la-parserInternals.o .libs/libxml2_la-parser.o .libs/libxml2_la-pattern.o .libs/libxml2_la-relaxng.o .libs/libxml2_la-tree.o .libs/libxml2_la-SAX2.o .libs/libxml2_la-threads.o .libs/libxml2_la-uri.o .libs/libxml2_la-valid.o .libs/libxml2_la-xmlIO.o .libs/libxml2_la-xmlreader.o .libs/libxml2_la-xmlregexp.o .libs/libxml2_la-xmlsave.o .libs/libxml2_la-xmlstring.o .libs/libxml2_la-xmlschemas.o .libs/libxml2_la-xmlschemastypes.o .libs/libxml2_la-xmlunicode.o .libs/libxml2_la-xmlwriter.o .libs/libxml2_la-xmlmemory.o .libs/libxml2_la-xpath.o

ar: `u' modifier ignored since `D' is the default (see `U')

libtool: link: ranlib .libs/libxml2.a

libtool: link: ( cd ".libs" && rm -f "libxml2.la" && ln -s "../libxml2.la" "libxml2.la" )

...

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -I../../src -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libxslt_la-extra.lo -MD -MP -MF .deps/libxslt_la-extra.Tpo -c extra.c -o libxslt_la-extra.o >/dev/null 2>&1

mv -f .deps/libxslt_la-extra.Tpo .deps/libxslt_la-extra.Plo

/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -I../../src -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libxslt_la-functions.lo -MD -MP -MF .deps/libxslt_la-functions.Tpo -c -o libxslt_la-functions.lo `test -f 'functions.c' || echo './'`functions.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -I../../src -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libxslt_la-functions.lo -MD -MP -MF .deps/libxslt_la-functions.Tpo -c functions.c -fPIC -DPIC -o .libs/libxslt_la-functions.o

functions.c: In function 'xsltGenerateIdFunction':

functions.c:699:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]

sprintf((char *)str, "id%ld", val);

In file included from /usr/include/stdio.h:862:0,

from ../../src/libxml2/include/libxml/xmlmemory.h:15,

from functions.c:25:

/usr/include/x86_64-linux-gnu/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 21 bytes into a destination of size 20

return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,

^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

__bos (__s), __fmt, __va_arg_pack ());

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -I../../src -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libxslt_la-functions.lo -MD -MP -MF .deps/libxslt_la-functions.Tpo -c functions.c -o libxslt_la-functions.o >/dev/null 2>&1

mv -f .deps/libxslt_la-functions.Tpo .deps/libxslt_la-functions.Plo

/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -I../../src -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libxslt_la-imports.lo -MD -MP -MF .deps/libxslt_la-imports.Tpo -c -o libxslt_la-imports.lo `test -f 'imports.c' || echo './'`imports.c

...

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-fitevd.lo -MD -MP -MF .deps/libcommon_la-fitevd.Tpo -c fitevd.c -fPIC -DPIC -o .libs/libcommon_la-fitevd.o

fitevd.c: In function 'fit_score_distribution':

fitevd.c:867:14: warning: '%.2f' directive writing between 4 and 313 bytes into a region of size between 0 and 3 [-Wformat-overflow=]

"Unable to estimate E-values because they don't follow "

^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

fitevd.c:868:58: note: format string is defined here

"an exponential distribution (mu1 %.2f, mu2 %.2f).",

^~~~

In file included from /usr/include/stdio.h:862:0,

from fitevd.h:3,

from fitevd.c:70:

/usr/include/x86_64-linux-gnu/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 104 and 722 bytes into a destination of size 100

return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,

^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

__bos (__s), __fmt, __va_arg_pack ());

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

...

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-json-checker.lo -MD -MP -MF .deps/libcommon_la-json-checker.Tpo -c json-checker.c -o libcommon_la-json-checker.o >/dev/null 2>&1

mv -f .deps/libcommon_la-json-checker.Tpo .deps/libcommon_la-json-checker.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-json-reader.lo -MD -MP -MF .deps/libcommon_la-json-reader.Tpo -c -o libcommon_la-json-reader.lo `test -f 'json-reader.c' || echo './'`json-reader.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-json-reader.lo -MD -MP -MF .deps/libcommon_la-json-reader.Tpo -c json-reader.c -fPIC -DPIC -o .libs/libcommon_la-json-reader.o

In file included from json-reader.c:2:0:

json-reader.c: In function 'next_token':

json-reader.c:596:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]

assert(jsonrd->token.state = TS_IN_PROGRESS);

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-json-reader.lo -MD -MP -MF .deps/libcommon_la-json-reader.Tpo -c json-reader.c -o libcommon_la-json-reader.o >/dev/null 2>&1

mv -f .deps/libcommon_la-json-reader.Tpo .deps/libcommon_la-json-reader.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-json-writer.lo -MD -MP -MF .deps/libcommon_la-json-writer.Tpo -c -o libcommon_la-json-writer.lo `test -f 'json-writer.c' || echo './'`json-writer.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-json-writer.lo -MD -MP -MF .deps/libcommon_la-json-writer.Tpo -c json-writer.c -fPIC -DPIC -o .libs/libcommon_la-json-writer.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-json-writer.lo -MD -MP -MF .deps/libcommon_la-json-writer.Tpo -c json-writer.c -o libcommon_la-json-writer.o >/dev/null 2>&1

mv -f .deps/libcommon_la-json-writer.Tpo .deps/libcommon_la-json-writer.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-karlin.lo -MD -MP -MF .deps/libcommon_la-karlin.Tpo -c -o libcommon_la-karlin.lo `test -f 'karlin.c' || echo './'`karlin.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-karlin.lo -MD -MP -MF .deps/libcommon_la-karlin.Tpo -c karlin.c -fPIC -DPIC -o .libs/libcommon_la-karlin.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-karlin.lo -MD -MP -MF .deps/libcommon_la-karlin.Tpo -c karlin.c -o libcommon_la-karlin.o >/dev/null 2>&1

mv -f .deps/libcommon_la-karlin.Tpo .deps/libcommon_la-karlin.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-linked-list.lo -MD -MP -MF .deps/libcommon_la-linked-list.Tpo -c -o libcommon_la-linked-list.lo `test -f 'linked-list.c' || echo './'`linked-list.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-linked-list.lo -MD -MP -MF .deps/libcommon_la-linked-list.Tpo -c linked-list.c -fPIC -DPIC -o .libs/libcommon_la-linked-list.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-linked-list.lo -MD -MP -MF .deps/libcommon_la-linked-list.Tpo -c linked-list.c -o libcommon_la-linked-list.o >/dev/null 2>&1

mv -f .deps/libcommon_la-linked-list.Tpo .deps/libcommon_la-linked-list.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-log-hmm.lo -MD -MP -MF .deps/libcommon_la-log-hmm.Tpo -c -o libcommon_la-log-hmm.lo `test -f 'log-hmm.c' || echo './'`log-hmm.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-log-hmm.lo -MD -MP -MF .deps/libcommon_la-log-hmm.Tpo -c log-hmm.c -fPIC -DPIC -o .libs/libcommon_la-log-hmm.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-log-hmm.lo -MD -MP -MF .deps/libcommon_la-log-hmm.Tpo -c log-hmm.c -o libcommon_la-log-hmm.o >/dev/null 2>&1

mv -f .deps/libcommon_la-log-hmm.Tpo .deps/libcommon_la-log-hmm.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-logodds.lo -MD -MP -MF .deps/libcommon_la-logodds.Tpo -c -o libcommon_la-logodds.lo `test -f 'logodds.c' || echo './'`logodds.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-logodds.lo -MD -MP -MF .deps/libcommon_la-logodds.Tpo -c logodds.c -fPIC -DPIC -o .libs/libcommon_la-logodds.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-logodds.lo -MD -MP -MF .deps/libcommon_la-logodds.Tpo -c logodds.c -o libcommon_la-logodds.o >/dev/null 2>&1

mv -f .deps/libcommon_la-logodds.Tpo .deps/libcommon_la-logodds.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-mast-util.lo -MD -MP -MF .deps/libcommon_la-mast-util.Tpo -c -o libcommon_la-mast-util.lo `test -f 'mast-util.c' || echo './'`mast-util.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-mast-util.lo -MD -MP -MF .deps/libcommon_la-mast-util.Tpo -c mast-util.c -fPIC -DPIC -o .libs/libcommon_la-mast-util.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-mast-util.lo -MD -MP -MF .deps/libcommon_la-mast-util.Tpo -c mast-util.c -o libcommon_la-mast-util.o >/dev/null 2>&1

mv -f .deps/libcommon_la-mast-util.Tpo .deps/libcommon_la-mast-util.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-match.lo -MD -MP -MF .deps/libcommon_la-match.Tpo -c -o libcommon_la-match.lo `test -f 'match.c' || echo './'`match.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-match.lo -MD -MP -MF .deps/libcommon_la-match.Tpo -c match.c -fPIC -DPIC -o .libs/libcommon_la-match.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-match.lo -MD -MP -MF .deps/libcommon_la-match.Tpo -c match.c -o libcommon_la-match.o >/dev/null 2>&1

mv -f .deps/libcommon_la-match.Tpo .deps/libcommon_la-match.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-matrix.lo -MD -MP -MF .deps/libcommon_la-matrix.Tpo -c -o libcommon_la-matrix.lo `test -f 'matrix.c' || echo './'`matrix.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-matrix.lo -MD -MP -MF .deps/libcommon_la-matrix.Tpo -c matrix.c -fPIC -DPIC -o .libs/libcommon_la-matrix.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-matrix.lo -MD -MP -MF .deps/libcommon_la-matrix.Tpo -c matrix.c -o libcommon_la-matrix.o >/dev/null 2>&1

mv -f .deps/libcommon_la-matrix.Tpo .deps/libcommon_la-matrix.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-mcast-match.lo -MD -MP -MF .deps/libcommon_la-mcast-match.Tpo -c -o libcommon_la-mcast-match.lo `test -f 'mcast-match.c' || echo './'`mcast-match.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-mcast-match.lo -MD -MP -MF .deps/libcommon_la-mcast-match.Tpo -c mcast-match.c -fPIC -DPIC -o .libs/libcommon_la-mcast-match.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-mcast-match.lo -MD -MP -MF .deps/libcommon_la-mcast-match.Tpo -c mcast-match.c -o libcommon_la-mcast-match.o >/dev/null 2>&1

mv -f .deps/libcommon_la-mcast-match.Tpo .deps/libcommon_la-mcast-match.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-meme-sax.lo -MD -MP -MF .deps/libcommon_la-meme-sax.Tpo -c -o libcommon_la-meme-sax.lo `test -f 'meme-sax.c' || echo './'`meme-sax.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-meme-sax.lo -MD -MP -MF .deps/libcommon_la-meme-sax.Tpo -c meme-sax.c -fPIC -DPIC -o .libs/libcommon_la-meme-sax.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-meme-sax.lo -MD -MP -MF .deps/libcommon_la-meme-sax.Tpo -c meme-sax.c -o libcommon_la-meme-sax.o >/dev/null 2>&1

mv -f .deps/libcommon_la-meme-sax.Tpo .deps/libcommon_la-meme-sax.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-metameme.lo -MD -MP -MF .deps/libcommon_la-metameme.Tpo -c -o libcommon_la-metameme.lo `test -f 'metameme.c' || echo './'`metameme.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-metameme.lo -MD -MP -MF .deps/libcommon_la-metameme.Tpo -c metameme.c -fPIC -DPIC -o .libs/libcommon_la-metameme.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-metameme.lo -MD -MP -MF .deps/libcommon_la-metameme.Tpo -c metameme.c -o libcommon_la-metameme.o >/dev/null 2>&1

mv -f .deps/libcommon_la-metameme.Tpo .deps/libcommon_la-metameme.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-mhmm.lo -MD -MP -MF .deps/libcommon_la-mhmm.Tpo -c -o libcommon_la-mhmm.lo `test -f 'mhmm.c' || echo './'`mhmm.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-mhmm.lo -MD -MP -MF .deps/libcommon_la-mhmm.Tpo -c mhmm.c -fPIC -DPIC -o .libs/libcommon_la-mhmm.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-mhmm.lo -MD -MP -MF .deps/libcommon_la-mhmm.Tpo -c mhmm.c -o libcommon_la-mhmm.o >/dev/null 2>&1

mv -f .deps/libcommon_la-mhmm.Tpo .deps/libcommon_la-mhmm.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-mhmms.lo -MD -MP -MF .deps/libcommon_la-mhmms.Tpo -c -o libcommon_la-mhmms.lo `test -f 'mhmms.c' || echo './'`mhmms.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-mhmms.lo -MD -MP -MF .deps/libcommon_la-mhmms.Tpo -c mhmms.c -fPIC -DPIC -o .libs/libcommon_la-mhmms.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-mhmms.lo -MD -MP -MF .deps/libcommon_la-mhmms.Tpo -c mhmms.c -o libcommon_la-mhmms.o >/dev/null 2>&1

mv -f .deps/libcommon_la-mhmms.Tpo .deps/libcommon_la-mhmms.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-mhmmscan.lo -MD -MP -MF .deps/libcommon_la-mhmmscan.Tpo -c -o libcommon_la-mhmmscan.lo `test -f 'mhmmscan.c' || echo './'`mhmmscan.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-mhmmscan.lo -MD -MP -MF .deps/libcommon_la-mhmmscan.Tpo -c mhmmscan.c -fPIC -DPIC -o .libs/libcommon_la-mhmmscan.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-mhmmscan.lo -MD -MP -MF .deps/libcommon_la-mhmmscan.Tpo -c mhmmscan.c -o libcommon_la-mhmmscan.o >/dev/null 2>&1

mv -f .deps/libcommon_la-mhmmscan.Tpo .deps/libcommon_la-mhmmscan.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-mhmm-state.lo -MD -MP -MF .deps/libcommon_la-mhmm-state.Tpo -c -o libcommon_la-mhmm-state.lo `test -f 'mhmm-state.c' || echo './'`mhmm-state.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-mhmm-state.lo -MD -MP -MF .deps/libcommon_la-mhmm-state.Tpo -c mhmm-state.c -fPIC -DPIC -o .libs/libcommon_la-mhmm-state.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-mhmm-state.lo -MD -MP -MF .deps/libcommon_la-mhmm-state.Tpo -c mhmm-state.c -o libcommon_la-mhmm-state.o >/dev/null 2>&1

mv -f .deps/libcommon_la-mhmm-state.Tpo .deps/libcommon_la-mhmm-state.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in.lo -MD -MP -MF .deps/libcommon_la-motif-in.Tpo -c -o libcommon_la-motif-in.lo `test -f 'motif-in.c' || echo './'`motif-in.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in.lo -MD -MP -MF .deps/libcommon_la-motif-in.Tpo -c motif-in.c -fPIC -DPIC -o .libs/libcommon_la-motif-in.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in.lo -MD -MP -MF .deps/libcommon_la-motif-in.Tpo -c motif-in.c -o libcommon_la-motif-in.o >/dev/null 2>&1

mv -f .deps/libcommon_la-motif-in.Tpo .deps/libcommon_la-motif-in.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in-common.lo -MD -MP -MF .deps/libcommon_la-motif-in-common.Tpo -c -o libcommon_la-motif-in-common.lo `test -f 'motif-in-common.c' || echo './'`motif-in-common.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in-common.lo -MD -MP -MF .deps/libcommon_la-motif-in-common.Tpo -c motif-in-common.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-common.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in-common.lo -MD -MP -MF .deps/libcommon_la-motif-in-common.Tpo -c motif-in-common.c -o libcommon_la-motif-in-common.o >/dev/null 2>&1

mv -f .deps/libcommon_la-motif-in-common.Tpo .deps/libcommon_la-motif-in-common.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in-dreme-xml.lo -MD -MP -MF .deps/libcommon_la-motif-in-dreme-xml.Tpo -c -o libcommon_la-motif-in-dreme-xml.lo `test -f 'motif-in-dreme-xml.c' || echo './'`motif-in-dreme-xml.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in-dreme-xml.lo -MD -MP -MF .deps/libcommon_la-motif-in-dreme-xml.Tpo -c motif-in-dreme-xml.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-dreme-xml.o

motif-in-dreme-xml.c: In function 'local_warning.constprop':

motif-in-dreme-xml.c:105:13: warning: 'Alphabet warning: ' directive output truncated writing 18 bytes into a region of size 1 [-Wformat-truncation=]

static void local_warning(CTX_T *data, char *format, ...) {

^~~~~~~~~~~~~

In file included from /usr/include/stdio.h:862:0,

from motif-in-dreme-xml.c:3:

/usr/include/x86_64-linux-gnu/bits/stdio2.h:77:10: note: '__builtin___vsnprintf_chk' output 21 or more bytes into a destination of size 1

return __builtin___vsnprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,

^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

__bos (__s), __fmt, __ap);

~~~~~~~~~~~~~~~~~~~~~~~~~

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in-dreme-xml.lo -MD -MP -MF .deps/libcommon_la-motif-in-dreme-xml.Tpo -c motif-in-dreme-xml.c -o libcommon_la-motif-in-dreme-xml.o >/dev/null 2>&1

mv -f .deps/libcommon_la-motif-in-dreme-xml.Tpo .deps/libcommon_la-motif-in-dreme-xml.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in-meme-html.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-html.Tpo -c -o libcommon_la-motif-in-meme-html.lo `test -f 'motif-in-meme-html.c' || echo './'`motif-in-meme-html.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in-meme-html.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-html.Tpo -c motif-in-meme-html.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-meme-html.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in-meme-html.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-html.Tpo -c motif-in-meme-html.c -o libcommon_la-motif-in-meme-html.o >/dev/null 2>&1

mv -f .deps/libcommon_la-motif-in-meme-html.Tpo .deps/libcommon_la-motif-in-meme-html.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in-meme-json.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-json.Tpo -c -o libcommon_la-motif-in-meme-json.lo `test -f 'motif-in-meme-json.c' || echo './'`motif-in-meme-json.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in-meme-json.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-json.Tpo -c motif-in-meme-json.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-meme-json.o

motif-in-meme-json.c: In function 'warning.constprop':

motif-in-meme-json.c:71:13: warning: 'Alphabet warning: ' directive output truncated writing 18 bytes into a region of size 1 [-Wformat-truncation=]

static void warning(void *user_data, char *format, ...) {

^~~~~~~

In file included from /usr/include/stdio.h:862:0,

from array.h:12,

from alphabet.h:12,

from alph-in.h:7,

from motif-in-meme-json.c:4:

/usr/include/x86_64-linux-gnu/bits/stdio2.h:77:10: note: '__builtin___vsnprintf_chk' output 20 or more bytes into a destination of size 1

return __builtin___vsnprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,

^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

__bos (__s), __fmt, __ap);

~~~~~~~~~~~~~~~~~~~~~~~~~

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in-meme-json.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-json.Tpo -c motif-in-meme-json.c -o libcommon_la-motif-in-meme-json.o >/dev/null 2>&1

mv -f .deps/libcommon_la-motif-in-meme-json.Tpo .deps/libcommon_la-motif-in-meme-json.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in-meme-text.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-text.Tpo -c -o libcommon_la-motif-in-meme-text.lo `test -f 'motif-in-meme-text.c' || echo './'`motif-in-meme-text.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in-meme-text.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-text.Tpo -c motif-in-meme-text.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-meme-text.o

motif-in-meme-text.c: In function 'warning.constprop':

motif-in-meme-text.c:356:13: warning: 'Alphabet warning: ' directive output truncated writing 18 bytes into a region of size 1 [-Wformat-truncation=]

static void warning(MTEXT_T *parser, const char *format, ...) {

^~~~~~~

In file included from /usr/include/stdio.h:862:0,

from motif-in-meme-text.c:5:

/usr/include/x86_64-linux-gnu/bits/stdio2.h:77:10: note: '__builtin___vsnprintf_chk' output 21 or more bytes into a destination of size 1

return __builtin___vsnprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,

^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

__bos (__s), __fmt, __ap);

~~~~~~~~~~~~~~~~~~~~~~~~~

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in-meme-text.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-text.Tpo -c motif-in-meme-text.c -o libcommon_la-motif-in-meme-text.o >/dev/null 2>&1

mv -f .deps/libcommon_la-motif-in-meme-text.Tpo .deps/libcommon_la-motif-in-meme-text.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in-meme-xml.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-xml.Tpo -c -o libcommon_la-motif-in-meme-xml.lo `test -f 'motif-in-meme-xml.c' || echo './'`motif-in-meme-xml.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in-meme-xml.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-xml.Tpo -c motif-in-meme-xml.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-meme-xml.o

motif-in-meme-xml.c: In function 'local_warning.constprop':

motif-in-meme-xml.c:175:13: warning: 'Alphabet warning: ' directive output truncated writing 18 bytes into a region of size 1 [-Wformat-truncation=]

static void local_warning(CTX_T *data, char *format, ...) {

^~~~~~~~~~~~~

In file included from /usr/include/stdio.h:862:0,

from array.h:12,

from alphabet.h:12,

from alph-in.h:7,

from motif-in-meme-xml.c:7:

/usr/include/x86_64-linux-gnu/bits/stdio2.h:77:10: note: '__builtin___vsnprintf_chk' output 21 or more bytes into a destination of size 1

return __builtin___vsnprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,

^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

__bos (__s), __fmt, __ap);

~~~~~~~~~~~~~~~~~~~~~~~~~

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif-in-meme-xml.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-xml.Tpo -c motif-in-meme-xml.c -o libcommon_la-motif-in-meme-xml.o >/dev/null 2>&1

mv -f .deps/libcommon_la-motif-in-meme-xml.Tpo .deps/libcommon_la-motif-in-meme-xml.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif.lo -MD -MP -MF .deps/libcommon_la-motif.Tpo -c -o libcommon_la-motif.lo `test -f 'motif.c' || echo './'`motif.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif.lo -MD -MP -MF .deps/libcommon_la-motif.Tpo -c motif.c -fPIC -DPIC -o .libs/libcommon_la-motif.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif.lo -MD -MP -MF .deps/libcommon_la-motif.Tpo -c motif.c -o libcommon_la-motif.o >/dev/null 2>&1

mv -f .deps/libcommon_la-motif.Tpo .deps/libcommon_la-motif.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif_regexp.lo -MD -MP -MF .deps/libcommon_la-motif_regexp.Tpo -c -o libcommon_la-motif_regexp.lo `test -f 'motif_regexp.c' || echo './'`motif_regexp.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif_regexp.lo -MD -MP -MF .deps/libcommon_la-motif_regexp.Tpo -c motif_regexp.c -fPIC -DPIC -o .libs/libcommon_la-motif_regexp.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motif_regexp.lo -MD -MP -MF .deps/libcommon_la-motif_regexp.Tpo -c motif_regexp.c -o libcommon_la-motif_regexp.o >/dev/null 2>&1

mv -f .deps/libcommon_la-motif_regexp.Tpo .deps/libcommon_la-motif_regexp.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motifs.lo -MD -MP -MF .deps/libcommon_la-motifs.Tpo -c -o libcommon_la-motifs.lo `test -f 'motifs.c' || echo './'`motifs.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motifs.lo -MD -MP -MF .deps/libcommon_la-motifs.Tpo -c motifs.c -fPIC -DPIC -o .libs/libcommon_la-motifs.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motifs.lo -MD -MP -MF .deps/libcommon_la-motifs.Tpo -c motifs.c -o libcommon_la-motifs.o >/dev/null 2>&1

mv -f .deps/libcommon_la-motifs.Tpo .deps/libcommon_la-motifs.Plo

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motiph-scoring.lo -MD -MP -MF .deps/libcommon_la-motiph-scoring.Tpo -c motiph-scoring.c -fPIC -DPIC -o .libs/libcommon_la-motiph-scoring.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-motiph-scoring.lo -MD -MP -MF .deps/libcommon_la-motiph-scoring.Tpo -c motiph-scoring.c -o libcommon_la-motiph-scoring.o >/dev/null 2>&1

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-mtwist.lo -MD -MP -MF .deps/libcommon_la-mtwist.Tpo -c mtwist.c -fPIC -DPIC -o .libs/libcommon_la-mtwist.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-mtwist.lo -MD -MP -MF .deps/libcommon_la-mtwist.Tpo -c mtwist.c -o libcommon_la-mtwist.o >/dev/null 2>&1

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-object-list.lo -MD -MP -MF .deps/libcommon_la-object-list.Tpo -c object-list.c -fPIC -DPIC -o .libs/libcommon_la-object-list.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-object-list.lo -MD -MP -MF .deps/libcommon_la-object-list.Tpo -c object-list.c -o libcommon_la-object-list.o >/dev/null 2>&1

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-order.lo -MD -MP -MF .deps/libcommon_la-order.Tpo -c order.c -fPIC -DPIC -o .libs/libcommon_la-order.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-order.lo -MD -MP -MF .deps/libcommon_la-order.Tpo -c order.c -o libcommon_la-order.o >/dev/null 2>&1

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/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-data-block.lo -MD -MP -MF .deps/libcommon_la-data-block.Tpo -c -o libcommon_la-data-block.lo `test -f 'data-block.c' || echo './'`data-block.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-data-block.lo -MD -MP -MF .deps/libcommon_la-data-block.Tpo -c data-block.c -fPIC -DPIC -o .libs/libcommon_la-data-block.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-data-block.lo -MD -MP -MF .deps/libcommon_la-data-block.Tpo -c data-block.c -o libcommon_la-data-block.o >/dev/null 2>&1

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/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-data-block-reader.lo -MD -MP -MF .deps/libcommon_la-data-block-reader.Tpo -c -o libcommon_la-data-block-reader.lo `test -f 'data-block-reader.c' || echo './'`data-block-reader.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-data-block-reader.lo -MD -MP -MF .deps/libcommon_la-data-block-reader.Tpo -c data-block-reader.c -fPIC -DPIC -o .libs/libcommon_la-data-block-reader.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-data-block-reader.lo -MD -MP -MF .deps/libcommon_la-data-block-reader.Tpo -c data-block-reader.c -o libcommon_la-data-block-reader.o >/dev/null 2>&1

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/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-parser-message.lo -MD -MP -MF .deps/libcommon_la-parser-message.Tpo -c -o libcommon_la-parser-message.lo `test -f 'parser-message.c' || echo './'`parser-message.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-parser-message.lo -MD -MP -MF .deps/libcommon_la-parser-message.Tpo -c parser-message.c -fPIC -DPIC -o .libs/libcommon_la-parser-message.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-parser-message.lo -MD -MP -MF .deps/libcommon_la-parser-message.Tpo -c parser-message.c -o libcommon_la-parser-message.o >/dev/null 2>&1

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/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-prealigned-io.lo -MD -MP -MF .deps/libcommon_la-prealigned-io.Tpo -c -o libcommon_la-prealigned-io.lo `test -f 'prealigned-io.c' || echo './'`prealigned-io.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-prealigned-io.lo -MD -MP -MF .deps/libcommon_la-prealigned-io.Tpo -c prealigned-io.c -fPIC -DPIC -o .libs/libcommon_la-prealigned-io.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-prealigned-io.lo -MD -MP -MF .deps/libcommon_la-prealigned-io.Tpo -c prealigned-io.c -o libcommon_la-prealigned-io.o >/dev/null 2>&1

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-prior-reader-from-psp.lo -MD -MP -MF .deps/libcommon_la-prior-reader-from-psp.Tpo -c prior-reader-from-psp.c -fPIC -DPIC -o .libs/libcommon_la-prior-reader-from-psp.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-prior-reader-from-psp.lo -MD -MP -MF .deps/libcommon_la-prior-reader-from-psp.Tpo -c prior-reader-from-psp.c -o libcommon_la-prior-reader-from-psp.o >/dev/null 2>&1

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-prior-reader-from-wig.lo -MD -MP -MF .deps/libcommon_la-prior-reader-from-wig.Tpo -c prior-reader-from-wig.c -fPIC -DPIC -o .libs/libcommon_la-prior-reader-from-wig.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-prior-reader-from-wig.lo -MD -MP -MF .deps/libcommon_la-prior-reader-from-wig.Tpo -c prior-reader-from-wig.c -o libcommon_la-prior-reader-from-wig.o >/dev/null 2>&1

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-prior-dist.lo -MD -MP -MF .deps/libcommon_la-prior-dist.Tpo -c prior-dist.c -fPIC -DPIC -o .libs/libcommon_la-prior-dist.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-prior-dist.lo -MD -MP -MF .deps/libcommon_la-prior-dist.Tpo -c prior-dist.c -o libcommon_la-prior-dist.o >/dev/null 2>&1

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/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-pssm.lo -MD -MP -MF .deps/libcommon_la-pssm.Tpo -c -o libcommon_la-pssm.lo `test -f 'pssm.c' || echo './'`pssm.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-pssm.lo -MD -MP -MF .deps/libcommon_la-pssm.Tpo -c pssm.c -fPIC -DPIC -o .libs/libcommon_la-pssm.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-pssm.lo -MD -MP -MF .deps/libcommon_la-pssm.Tpo -c pssm.c -o libcommon_la-pssm.o >/dev/null 2>&1

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/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-pssm-distr.lo -MD -MP -MF .deps/libcommon_la-pssm-distr.Tpo -c -o libcommon_la-pssm-distr.lo `test -f 'pssm-distr.c' || echo './'`pssm-distr.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-pssm-distr.lo -MD -MP -MF .deps/libcommon_la-pssm-distr.Tpo -c pssm-distr.c -fPIC -DPIC -o .libs/libcommon_la-pssm-distr.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-pssm-distr.lo -MD -MP -MF .deps/libcommon_la-pssm-distr.Tpo -c pssm-distr.c -o libcommon_la-pssm-distr.o >/dev/null 2>&1

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-qvalue.lo -MD -MP -MF .deps/libcommon_la-qvalue.Tpo -c qvalue.c -fPIC -DPIC -o .libs/libcommon_la-qvalue.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-qvalue.lo -MD -MP -MF .deps/libcommon_la-qvalue.Tpo -c qvalue.c -o libcommon_la-qvalue.o >/dev/null 2>&1

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/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-ranksum_test.lo -MD -MP -MF .deps/libcommon_la-ranksum_test.Tpo -c -o libcommon_la-ranksum_test.lo `test -f 'ranksum_test.c' || echo './'`ranksum_test.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-ranksum_test.lo -MD -MP -MF .deps/libcommon_la-ranksum_test.Tpo -c ranksum_test.c -fPIC -DPIC -o .libs/libcommon_la-ranksum_test.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-ranksum_test.lo -MD -MP -MF .deps/libcommon_la-ranksum_test.Tpo -c ranksum_test.c -o libcommon_la-ranksum_test.o >/dev/null 2>&1

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-rdb-matrix.lo -MD -MP -MF .deps/libcommon_la-rdb-matrix.Tpo -c rdb-matrix.c -fPIC -DPIC -o .libs/libcommon_la-rdb-matrix.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-rdb-matrix.lo -MD -MP -MF .deps/libcommon_la-rdb-matrix.Tpo -c rdb-matrix.c -o libcommon_la-rdb-matrix.o >/dev/null 2>&1

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-read-mhmm.lo -MD -MP -MF .deps/libcommon_la-read-mhmm.Tpo -c read-mhmm.c -fPIC -DPIC -o .libs/libcommon_la-read-mhmm.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-read-mhmm.lo -MD -MP -MF .deps/libcommon_la-read-mhmm.Tpo -c read-mhmm.c -o libcommon_la-read-mhmm.o >/dev/null 2>&1

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-read_sequence.lo -MD -MP -MF .deps/libcommon_la-read_sequence.Tpo -c read_sequence.c -fPIC -DPIC -o .libs/libcommon_la-read_sequence.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-read_sequence.lo -MD -MP -MF .deps/libcommon_la-read_sequence.Tpo -c read_sequence.c -o libcommon_la-read_sequence.o >/dev/null 2>&1

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-red-black-tree.lo -MD -MP -MF .deps/libcommon_la-red-black-tree.Tpo -c red-black-tree.c -fPIC -DPIC -o .libs/libcommon_la-red-black-tree.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-red-black-tree.lo -MD -MP -MF .deps/libcommon_la-red-black-tree.Tpo -c red-black-tree.c -o libcommon_la-red-black-tree.o >/dev/null 2>&1

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-regex-utils.lo -MD -MP -MF .deps/libcommon_la-regex-utils.Tpo -c regex-utils.c -fPIC -DPIC -o .libs/libcommon_la-regex-utils.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-regex-utils.lo -MD -MP -MF .deps/libcommon_la-regex-utils.Tpo -c regex-utils.c -o libcommon_la-regex-utils.o >/dev/null 2>&1

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/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-regress.lo -MD -MP -MF .deps/libcommon_la-regress.Tpo -c -o libcommon_la-regress.lo `test -f 'regress.c' || echo './'`regress.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-regress.lo -MD -MP -MF .deps/libcommon_la-regress.Tpo -c regress.c -fPIC -DPIC -o .libs/libcommon_la-regress.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-regress.lo -MD -MP -MF .deps/libcommon_la-regress.Tpo -c regress.c -o libcommon_la-regress.o >/dev/null 2>&1

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/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-reservoir.lo -MD -MP -MF .deps/libcommon_la-reservoir.Tpo -c -o libcommon_la-reservoir.lo `test -f 'reservoir.c' || echo './'`reservoir.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-reservoir.lo -MD -MP -MF .deps/libcommon_la-reservoir.Tpo -c reservoir.c -fPIC -DPIC -o .libs/libcommon_la-reservoir.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-reservoir.lo -MD -MP -MF .deps/libcommon_la-reservoir.Tpo -c reservoir.c -o libcommon_la-reservoir.o >/dev/null 2>&1

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/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-sax-parser-utils.lo -MD -MP -MF .deps/libcommon_la-sax-parser-utils.Tpo -c -o libcommon_la-sax-parser-utils.lo `test -f 'sax-parser-utils.c' || echo './'`sax-parser-utils.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-sax-parser-utils.lo -MD -MP -MF .deps/libcommon_la-sax-parser-utils.Tpo -c sax-parser-utils.c -fPIC -DPIC -o .libs/libcommon_la-sax-parser-utils.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-sax-parser-utils.lo -MD -MP -MF .deps/libcommon_la-sax-parser-utils.Tpo -c sax-parser-utils.c -o libcommon_la-sax-parser-utils.o >/dev/null 2>&1

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-scanned-sequence.lo -MD -MP -MF .deps/libcommon_la-scanned-sequence.Tpo -c scanned-sequence.c -fPIC -DPIC -o .libs/libcommon_la-scanned-sequence.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-scanned-sequence.lo -MD -MP -MF .deps/libcommon_la-scanned-sequence.Tpo -c scanned-sequence.c -o libcommon_la-scanned-sequence.o >/dev/null 2>&1

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-scored-sites.lo -MD -MP -MF .deps/libcommon_la-scored-sites.Tpo -c scored-sites.c -fPIC -DPIC -o .libs/libcommon_la-scored-sites.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-scored-sites.lo -MD -MP -MF .deps/libcommon_la-scored-sites.Tpo -c scored-sites.c -o libcommon_la-scored-sites.o >/dev/null 2>&1

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-seq.lo -MD -MP -MF .deps/libcommon_la-seq.Tpo -c seq.c -fPIC -DPIC -o .libs/libcommon_la-seq.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-seq.lo -MD -MP -MF .deps/libcommon_la-seq.Tpo -c seq.c -o libcommon_la-seq.o >/dev/null 2>&1

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-seq-reader-from-fasta.lo -MD -MP -MF .deps/libcommon_la-seq-reader-from-fasta.Tpo -c seq-reader-from-fasta.c -fPIC -DPIC -o .libs/libcommon_la-seq-reader-from-fasta.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-seq-reader-from-fasta.lo -MD -MP -MF .deps/libcommon_la-seq-reader-from-fasta.Tpo -c seq-reader-from-fasta.c -o libcommon_la-seq-reader-from-fasta.o >/dev/null 2>&1

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-simple-getopt.lo -MD -MP -MF .deps/libcommon_la-simple-getopt.Tpo -c simple-getopt.c -fPIC -DPIC -o .libs/libcommon_la-simple-getopt.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-simple-getopt.lo -MD -MP -MF .deps/libcommon_la-simple-getopt.Tpo -c simple-getopt.c -o libcommon_la-simple-getopt.o >/dev/null 2>&1

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-spearman-rank-correlation.lo -MD -MP -MF .deps/libcommon_la-spearman-rank-correlation.Tpo -c spearman-rank-correlation.c -fPIC -DPIC -o .libs/libcommon_la-spearman-rank-correlation.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-spearman-rank-correlation.lo -MD -MP -MF .deps/libcommon_la-spearman-rank-correlation.Tpo -c spearman-rank-correlation.c -o libcommon_la-spearman-rank-correlation.o >/dev/null 2>&1

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-string-builder.lo -MD -MP -MF .deps/libcommon_la-string-builder.Tpo -c string-builder.c -fPIC -DPIC -o .libs/libcommon_la-string-builder.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-string-builder.lo -MD -MP -MF .deps/libcommon_la-string-builder.Tpo -c string-builder.c -o libcommon_la-string-builder.o >/dev/null 2>&1

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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-string-list.lo -MD -MP -MF .deps/libcommon_la-string-list.Tpo -c string-list.c -fPIC -DPIC -o .libs/libcommon_la-string-list.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-string-list.lo -MD -MP -MF .deps/libcommon_la-string-list.Tpo -c string-list.c -o libcommon_la-string-list.o >/dev/null 2>&1

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/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-string-match.lo -MD -MP -MF .deps/libcommon_la-string-match.Tpo -c -o libcommon_la-string-match.lo `test -f 'string-match.c' || echo './'`string-match.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-string-match.lo -MD -MP -MF .deps/libcommon_la-string-match.Tpo -c string-match.c -fPIC -DPIC -o .libs/libcommon_la-string-match.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-string-match.lo -MD -MP -MF .deps/libcommon_la-string-match.Tpo -c string-match.c -o libcommon_la-string-match.o >/dev/null 2>&1

mv -f .deps/libcommon_la-string-match.Tpo .deps/libcommon_la-string-match.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-subst-matrix.lo -MD -MP -MF .deps/libcommon_la-subst-matrix.Tpo -c -o libcommon_la-subst-matrix.lo `test -f 'subst-matrix.c' || echo './'`subst-matrix.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-subst-matrix.lo -MD -MP -MF .deps/libcommon_la-subst-matrix.Tpo -c subst-matrix.c -fPIC -DPIC -o .libs/libcommon_la-subst-matrix.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-subst-matrix.lo -MD -MP -MF .deps/libcommon_la-subst-matrix.Tpo -c subst-matrix.c -o libcommon_la-subst-matrix.o >/dev/null 2>&1

mv -f .deps/libcommon_la-subst-matrix.Tpo .deps/libcommon_la-subst-matrix.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-substmatrix-table.lo -MD -MP -MF .deps/libcommon_la-substmatrix-table.Tpo -c -o libcommon_la-substmatrix-table.lo `test -f 'substmatrix-table.c' || echo './'`substmatrix-table.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-substmatrix-table.lo -MD -MP -MF .deps/libcommon_la-substmatrix-table.Tpo -c substmatrix-table.c -fPIC -DPIC -o .libs/libcommon_la-substmatrix-table.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-substmatrix-table.lo -MD -MP -MF .deps/libcommon_la-substmatrix-table.Tpo -c substmatrix-table.c -o libcommon_la-substmatrix-table.o >/dev/null 2>&1

mv -f .deps/libcommon_la-substmatrix-table.Tpo .deps/libcommon_la-substmatrix-table.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-transfac.lo -MD -MP -MF .deps/libcommon_la-transfac.Tpo -c -o libcommon_la-transfac.lo `test -f 'transfac.c' || echo './'`transfac.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-transfac.lo -MD -MP -MF .deps/libcommon_la-transfac.Tpo -c transfac.c -fPIC -DPIC -o .libs/libcommon_la-transfac.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-transfac.lo -MD -MP -MF .deps/libcommon_la-transfac.Tpo -c transfac.c -o libcommon_la-transfac.o >/dev/null 2>&1

mv -f .deps/libcommon_la-transfac.Tpo .deps/libcommon_la-transfac.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-tree.lo -MD -MP -MF .deps/libcommon_la-tree.Tpo -c -o libcommon_la-tree.lo `test -f 'tree.c' || echo './'`tree.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-tree.lo -MD -MP -MF .deps/libcommon_la-tree.Tpo -c tree.c -fPIC -DPIC -o .libs/libcommon_la-tree.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-tree.lo -MD -MP -MF .deps/libcommon_la-tree.Tpo -c tree.c -o libcommon_la-tree.o >/dev/null 2>&1

mv -f .deps/libcommon_la-tree.Tpo .deps/libcommon_la-tree.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-utils.lo -MD -MP -MF .deps/libcommon_la-utils.Tpo -c -o libcommon_la-utils.lo `test -f 'utils.c' || echo './'`utils.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-utils.lo -MD -MP -MF .deps/libcommon_la-utils.Tpo -c utils.c -fPIC -DPIC -o .libs/libcommon_la-utils.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-utils.lo -MD -MP -MF .deps/libcommon_la-utils.Tpo -c utils.c -o libcommon_la-utils.o >/dev/null 2>&1

mv -f .deps/libcommon_la-utils.Tpo .deps/libcommon_la-utils.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-wiggle-reader.lo -MD -MP -MF .deps/libcommon_la-wiggle-reader.Tpo -c -o libcommon_la-wiggle-reader.lo `test -f 'wiggle-reader.c' || echo './'`wiggle-reader.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-wiggle-reader.lo -MD -MP -MF .deps/libcommon_la-wiggle-reader.Tpo -c wiggle-reader.c -fPIC -DPIC -o .libs/libcommon_la-wiggle-reader.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-wiggle-reader.lo -MD -MP -MF .deps/libcommon_la-wiggle-reader.Tpo -c wiggle-reader.c -o libcommon_la-wiggle-reader.o >/dev/null 2>&1

mv -f .deps/libcommon_la-wiggle-reader.Tpo .deps/libcommon_la-wiggle-reader.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-write-mhmm.lo -MD -MP -MF .deps/libcommon_la-write-mhmm.Tpo -c -o libcommon_la-write-mhmm.lo `test -f 'write-mhmm.c' || echo './'`write-mhmm.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-write-mhmm.lo -MD -MP -MF .deps/libcommon_la-write-mhmm.Tpo -c write-mhmm.c -fPIC -DPIC -o .libs/libcommon_la-write-mhmm.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-write-mhmm.lo -MD -MP -MF .deps/libcommon_la-write-mhmm.Tpo -c write-mhmm.c -o libcommon_la-write-mhmm.o >/dev/null 2>&1

mv -f .deps/libcommon_la-write-mhmm.Tpo .deps/libcommon_la-write-mhmm.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-xlate-in.lo -MD -MP -MF .deps/libcommon_la-xlate-in.Tpo -c -o libcommon_la-xlate-in.lo `test -f 'xlate-in.c' || echo './'`xlate-in.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-xlate-in.lo -MD -MP -MF .deps/libcommon_la-xlate-in.Tpo -c xlate-in.c -fPIC -DPIC -o .libs/libcommon_la-xlate-in.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-xlate-in.lo -MD -MP -MF .deps/libcommon_la-xlate-in.Tpo -c xlate-in.c -o libcommon_la-xlate-in.o >/dev/null 2>&1

mv -f .deps/libcommon_la-xlate-in.Tpo .deps/libcommon_la-xlate-in.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-xml-out.lo -MD -MP -MF .deps/libcommon_la-xml-out.Tpo -c -o libcommon_la-xml-out.lo `test -f 'xml-out.c' || echo './'`xml-out.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-xml-out.lo -MD -MP -MF .deps/libcommon_la-xml-out.Tpo -c xml-out.c -fPIC -DPIC -o .libs/libcommon_la-xml-out.o

xml-out.c: In function 'xmlify':

xml-out.c:123:9: warning: this 'else' clause does not guard... [-Wmisleading-indentation]

else str_append(buffer, "	", 4); continue;

^~~~

xml-out.c:123:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'

else str_append(buffer, "	", 4); continue;

^~~~~~~~

xml-out.c:126:9: warning: this 'else' clause does not guard... [-Wmisleading-indentation]

else str_append(buffer, "
", 5); continue;

^~~~

xml-out.c:126:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'

else str_append(buffer, "
", 5); continue;

^~~~~~~~

xml-out.c:129:9: warning: this 'else' clause does not guard... [-Wmisleading-indentation]

else str_append(buffer, "", 5); continue;

^~~~

xml-out.c:129:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'

else str_append(buffer, "", 5); continue;

^~~~~~~~

xml-out.c:132:9: warning: this 'else' clause does not guard... [-Wmisleading-indentation]

else str_append(buffer, """, 6); continue;

^~~~

xml-out.c:132:47: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'

else str_append(buffer, """, 6); continue;

^~~~~~~~

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-xml-out.lo -MD -MP -MF .deps/libcommon_la-xml-out.Tpo -c xml-out.c -o libcommon_la-xml-out.o >/dev/null 2>&1

mv -f .deps/libcommon_la-xml-out.Tpo .deps/libcommon_la-xml-out.Plo

/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-xml-util.lo -MD -MP -MF .deps/libcommon_la-xml-util.Tpo -c -o libcommon_la-xml-util.lo `test -f 'xml-util.c' || echo './'`xml-util.c

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-xml-util.lo -MD -MP -MF .deps/libcommon_la-xml-util.Tpo -c xml-util.c -fPIC -DPIC -o .libs/libcommon_la-xml-util.o

libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT libcommon_la-xml-util.lo -MD -MP -MF .deps/libcommon_la-xml-util.Tpo -c xml-util.c -o libcommon_la-xml-util.o >/dev/null 2>&1

mv -f .deps/libcommon_la-xml-util.Tpo .deps/libcommon_la-xml-util.Plo

/bin/bash ../libtool --tag=CC --mode=link gcc -fno-strict-aliasing -I../src/libxml2/include -I../src/ -I../src/libexslt -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o libcommon.la libcommon_la-alignment.lo libcommon_la-alph-in.lo libcommon_la-alphabet.lo libcommon_la-array.lo libcommon_la-array-list.lo libcommon_la-binary-search.lo libcommon_la-binomial.lo libcommon_la-build-hmm.lo libcommon_la-buffer.lo libcommon_la-ceqlogo.lo libcommon_la-cisml.lo libcommon_la-cisml-sax.lo libcommon_la-clustalw-io.lo libcommon_la-dp.lo libcommon_la-dreme-sax.lo libcommon_la-eps2png.lo libcommon_la-empirical-qvalue.lo libcommon_la-evomodel.lo libcommon_la-fasta-io.lo libcommon_la-fitevd.lo libcommon_la-gendb.lo libcommon_la-hash_table.lo libcommon_la-heap.lo libcommon_la-html-data.lo libcommon_la-html-monolith.lo libcommon_la-io.lo libcommon_la-json-checker.lo libcommon_la-json-reader.lo libcommon_la-json-writer.lo libcommon_la-karlin.lo libcommon_la-linked-list.lo libcommon_la-log-hmm.lo libcommon_la-logodds.lo libcommon_la-mast-util.lo libcommon_la-match.lo libcommon_la-matrix.lo libcommon_la-mcast-match.lo libcommon_la-meme-sax.lo libcommon_la-metameme.lo libcommon_la-mhmm.lo libcommon_la-mhmms.lo libcommon_la-mhmmscan.lo libcommon_la-mhmm-state.lo libcommon_la-motif-in.lo libcommon_la-motif-in-common.lo libcommon_la-motif-in-dreme-xml.lo libcommon_la-motif-in-meme-html.lo libcommon_la-motif-in-meme-json.lo libcommon_la-motif-in-meme-text.lo libcommon_la-motif-in-meme-xml.lo libcommon_la-motif.lo libcommon_la-motif_regexp.lo libcommon_la-motifs.lo libcommon_la-motiph-scoring.lo libcommon_la-mtwist.lo libcommon_la-object-list.lo libcommon_la-order.lo libcommon_la-data-block.lo libcommon_la-data-block-reader.lo libcommon_la-parser-message.lo libcommon_la-prealigned-io.lo libcommon_la-prior-reader-from-psp.lo libcommon_la-prior-reader-from-wig.lo libcommon_la-prior-dist.lo libcommon_la-pssm.lo libcommon_la-pssm-distr.lo libcommon_la-qvalue.lo libcommon_la-ranksum_test.lo libcommon_la-rdb-matrix.lo libcommon_la-read-mhmm.lo libcommon_la-read_sequence.lo libcommon_la-red-black-tree.lo libcommon_la-regex-utils.lo libcommon_la-regress.lo libcommon_la-reservoir.lo libcommon_la-sax-parser-utils.lo libcommon_la-scanned-sequence.lo libcommon_la-scored-sites.lo libcommon_la-seq.lo libcommon_la-seq-reader-from-fasta.lo libcommon_la-simple-getopt.lo libcommon_la-spearman-rank-correlation.lo libcommon_la-string-builder.lo libcommon_la-string-list.lo libcommon_la-string-match.lo libcommon_la-subst-matrix.lo libcommon_la-substmatrix-table.lo libcommon_la-transfac.lo libcommon_la-tree.lo libcommon_la-utils.lo libcommon_la-wiggle-reader.lo libcommon_la-write-mhmm.lo libcommon_la-xlate-in.lo libcommon_la-xml-out.lo libcommon_la-xml-util.lo ../src/libxml2/libxml2.la ../src/libxslt/libxslt.la ../src/libexslt/libexslt.la -lm -lz -lm

libtool: link: (cd .libs/libcommon.lax/libxml2.a && ar x "/meme_4.11.3/src/../src/libxml2/.libs/libxml2.a")

libtool: link: (cd .libs/libcommon.lax/libxslt.a && ar x "/meme_4.11.3/src/../src/libxslt/.libs/libxslt.a")

libtool: link: (cd .libs/libcommon.lax/libexslt.a && ar x "/meme_4.11.3/src/../src/libexslt/.libs/libexslt.a")

copying selected object files to avoid basename conflicts...

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-HTMLparser.o .libs/libcommon.lax/lt1-libxml2_la-HTMLparser.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-HTMLparser.o .libs/libcommon.lax/lt1-libxml2_la-HTMLparser.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-HTMLtree.o .libs/libcommon.lax/lt2-libxml2_la-HTMLtree.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-HTMLtree.o .libs/libcommon.lax/lt2-libxml2_la-HTMLtree.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-SAX2.o .libs/libcommon.lax/lt3-libxml2_la-SAX2.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-SAX2.o .libs/libcommon.lax/lt3-libxml2_la-SAX2.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-chvalid.o .libs/libcommon.lax/lt4-libxml2_la-chvalid.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-chvalid.o .libs/libcommon.lax/lt4-libxml2_la-chvalid.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-debugXML.o .libs/libcommon.lax/lt5-libxml2_la-debugXML.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-debugXML.o .libs/libcommon.lax/lt5-libxml2_la-debugXML.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-dict.o .libs/libcommon.lax/lt6-libxml2_la-dict.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-dict.o .libs/libcommon.lax/lt6-libxml2_la-dict.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-encoding.o .libs/libcommon.lax/lt7-libxml2_la-encoding.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-encoding.o .libs/libcommon.lax/lt7-libxml2_la-encoding.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-entities.o .libs/libcommon.lax/lt8-libxml2_la-entities.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-entities.o .libs/libcommon.lax/lt8-libxml2_la-entities.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-error.o .libs/libcommon.lax/lt9-libxml2_la-error.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-error.o .libs/libcommon.lax/lt9-libxml2_la-error.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-globals.o .libs/libcommon.lax/lt10-libxml2_la-globals.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-globals.o .libs/libcommon.lax/lt10-libxml2_la-globals.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-hash.o .libs/libcommon.lax/lt11-libxml2_la-hash.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-hash.o .libs/libcommon.lax/lt11-libxml2_la-hash.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-list.o .libs/libcommon.lax/lt12-libxml2_la-list.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-list.o .libs/libcommon.lax/lt12-libxml2_la-list.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-parser.o .libs/libcommon.lax/lt13-libxml2_la-parser.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-parser.o .libs/libcommon.lax/lt13-libxml2_la-parser.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-parserInternals.o .libs/libcommon.lax/lt14-libxml2_la-parserInternals.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-parserInternals.o .libs/libcommon.lax/lt14-libxml2_la-parserInternals.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-pattern.o .libs/libcommon.lax/lt15-libxml2_la-pattern.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-pattern.o .libs/libcommon.lax/lt15-libxml2_la-pattern.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-relaxng.o .libs/libcommon.lax/lt16-libxml2_la-relaxng.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-relaxng.o .libs/libcommon.lax/lt16-libxml2_la-relaxng.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-threads.o .libs/libcommon.lax/lt17-libxml2_la-threads.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-threads.o .libs/libcommon.lax/lt17-libxml2_la-threads.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-tree.o .libs/libcommon.lax/lt18-libxml2_la-tree.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-tree.o .libs/libcommon.lax/lt18-libxml2_la-tree.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-uri.o .libs/libcommon.lax/lt19-libxml2_la-uri.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-uri.o .libs/libcommon.lax/lt19-libxml2_la-uri.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-valid.o .libs/libcommon.lax/lt20-libxml2_la-valid.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-valid.o .libs/libcommon.lax/lt20-libxml2_la-valid.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-xmlIO.o .libs/libcommon.lax/lt21-libxml2_la-xmlIO.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-xmlIO.o .libs/libcommon.lax/lt21-libxml2_la-xmlIO.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-xmlmemory.o .libs/libcommon.lax/lt22-libxml2_la-xmlmemory.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-xmlmemory.o .libs/libcommon.lax/lt22-libxml2_la-xmlmemory.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-xmlreader.o .libs/libcommon.lax/lt23-libxml2_la-xmlreader.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-xmlreader.o .libs/libcommon.lax/lt23-libxml2_la-xmlreader.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-xmlregexp.o .libs/libcommon.lax/lt24-libxml2_la-xmlregexp.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-xmlregexp.o .libs/libcommon.lax/lt24-libxml2_la-xmlregexp.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-xmlsave.o .libs/libcommon.lax/lt25-libxml2_la-xmlsave.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-xmlsave.o .libs/libcommon.lax/lt25-libxml2_la-xmlsave.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-xmlschemas.o .libs/libcommon.lax/lt26-libxml2_la-xmlschemas.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-xmlschemas.o .libs/libcommon.lax/lt26-libxml2_la-xmlschemas.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-xmlschemastypes.o .libs/libcommon.lax/lt27-libxml2_la-xmlschemastypes.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-xmlschemastypes.o .libs/libcommon.lax/lt27-libxml2_la-xmlschemastypes.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-xmlstring.o .libs/libcommon.lax/lt28-libxml2_la-xmlstring.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-xmlstring.o .libs/libcommon.lax/lt28-libxml2_la-xmlstring.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-xmlunicode.o .libs/libcommon.lax/lt29-libxml2_la-xmlunicode.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-xmlunicode.o .libs/libcommon.lax/lt29-libxml2_la-xmlunicode.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-xmlwriter.o .libs/libcommon.lax/lt30-libxml2_la-xmlwriter.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-xmlwriter.o .libs/libcommon.lax/lt30-libxml2_la-xmlwriter.o

libtool: link: ln .libs/libcommon.lax/libxslt.a/libxml2_la-xpath.o .libs/libcommon.lax/lt31-libxml2_la-xpath.o || cp .libs/libcommon.lax/libxslt.a/libxml2_la-xpath.o .libs/libcommon.lax/lt31-libxml2_la-xpath.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-HTMLparser.o .libs/libcommon.lax/lt32-libxml2_la-HTMLparser.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-HTMLparser.o .libs/libcommon.lax/lt32-libxml2_la-HTMLparser.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-HTMLtree.o .libs/libcommon.lax/lt33-libxml2_la-HTMLtree.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-HTMLtree.o .libs/libcommon.lax/lt33-libxml2_la-HTMLtree.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-SAX2.o .libs/libcommon.lax/lt34-libxml2_la-SAX2.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-SAX2.o .libs/libcommon.lax/lt34-libxml2_la-SAX2.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-chvalid.o .libs/libcommon.lax/lt35-libxml2_la-chvalid.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-chvalid.o .libs/libcommon.lax/lt35-libxml2_la-chvalid.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-debugXML.o .libs/libcommon.lax/lt36-libxml2_la-debugXML.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-debugXML.o .libs/libcommon.lax/lt36-libxml2_la-debugXML.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-dict.o .libs/libcommon.lax/lt37-libxml2_la-dict.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-dict.o .libs/libcommon.lax/lt37-libxml2_la-dict.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-encoding.o .libs/libcommon.lax/lt38-libxml2_la-encoding.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-encoding.o .libs/libcommon.lax/lt38-libxml2_la-encoding.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-entities.o .libs/libcommon.lax/lt39-libxml2_la-entities.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-entities.o .libs/libcommon.lax/lt39-libxml2_la-entities.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-error.o .libs/libcommon.lax/lt40-libxml2_la-error.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-error.o .libs/libcommon.lax/lt40-libxml2_la-error.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-globals.o .libs/libcommon.lax/lt41-libxml2_la-globals.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-globals.o .libs/libcommon.lax/lt41-libxml2_la-globals.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-hash.o .libs/libcommon.lax/lt42-libxml2_la-hash.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-hash.o .libs/libcommon.lax/lt42-libxml2_la-hash.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-list.o .libs/libcommon.lax/lt43-libxml2_la-list.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-list.o .libs/libcommon.lax/lt43-libxml2_la-list.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-parser.o .libs/libcommon.lax/lt44-libxml2_la-parser.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-parser.o .libs/libcommon.lax/lt44-libxml2_la-parser.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-parserInternals.o .libs/libcommon.lax/lt45-libxml2_la-parserInternals.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-parserInternals.o .libs/libcommon.lax/lt45-libxml2_la-parserInternals.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-pattern.o .libs/libcommon.lax/lt46-libxml2_la-pattern.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-pattern.o .libs/libcommon.lax/lt46-libxml2_la-pattern.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-relaxng.o .libs/libcommon.lax/lt47-libxml2_la-relaxng.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-relaxng.o .libs/libcommon.lax/lt47-libxml2_la-relaxng.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-threads.o .libs/libcommon.lax/lt48-libxml2_la-threads.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-threads.o .libs/libcommon.lax/lt48-libxml2_la-threads.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-tree.o .libs/libcommon.lax/lt49-libxml2_la-tree.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-tree.o .libs/libcommon.lax/lt49-libxml2_la-tree.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-uri.o .libs/libcommon.lax/lt50-libxml2_la-uri.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-uri.o .libs/libcommon.lax/lt50-libxml2_la-uri.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-valid.o .libs/libcommon.lax/lt51-libxml2_la-valid.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-valid.o .libs/libcommon.lax/lt51-libxml2_la-valid.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-xmlIO.o .libs/libcommon.lax/lt52-libxml2_la-xmlIO.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-xmlIO.o .libs/libcommon.lax/lt52-libxml2_la-xmlIO.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-xmlmemory.o .libs/libcommon.lax/lt53-libxml2_la-xmlmemory.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-xmlmemory.o .libs/libcommon.lax/lt53-libxml2_la-xmlmemory.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-xmlreader.o .libs/libcommon.lax/lt54-libxml2_la-xmlreader.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-xmlreader.o .libs/libcommon.lax/lt54-libxml2_la-xmlreader.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-xmlregexp.o .libs/libcommon.lax/lt55-libxml2_la-xmlregexp.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-xmlregexp.o .libs/libcommon.lax/lt55-libxml2_la-xmlregexp.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-xmlsave.o .libs/libcommon.lax/lt56-libxml2_la-xmlsave.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-xmlsave.o .libs/libcommon.lax/lt56-libxml2_la-xmlsave.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-xmlschemas.o .libs/libcommon.lax/lt57-libxml2_la-xmlschemas.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-xmlschemas.o .libs/libcommon.lax/lt57-libxml2_la-xmlschemas.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-xmlschemastypes.o .libs/libcommon.lax/lt58-libxml2_la-xmlschemastypes.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-xmlschemastypes.o .libs/libcommon.lax/lt58-libxml2_la-xmlschemastypes.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-xmlstring.o .libs/libcommon.lax/lt59-libxml2_la-xmlstring.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-xmlstring.o .libs/libcommon.lax/lt59-libxml2_la-xmlstring.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-xmlunicode.o .libs/libcommon.lax/lt60-libxml2_la-xmlunicode.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-xmlunicode.o .libs/libcommon.lax/lt60-libxml2_la-xmlunicode.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-xmlwriter.o .libs/libcommon.lax/lt61-libxml2_la-xmlwriter.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-xmlwriter.o .libs/libcommon.lax/lt61-libxml2_la-xmlwriter.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxml2_la-xpath.o .libs/libcommon.lax/lt62-libxml2_la-xpath.o || cp .libs/libcommon.lax/libexslt.a/libxml2_la-xpath.o .libs/libcommon.lax/lt62-libxml2_la-xpath.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxslt_la-attributes.o .libs/libcommon.lax/lt63-libxslt_la-attributes.o || cp .libs/libcommon.lax/libexslt.a/libxslt_la-attributes.o .libs/libcommon.lax/lt63-libxslt_la-attributes.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxslt_la-attrvt.o .libs/libcommon.lax/lt64-libxslt_la-attrvt.o || cp .libs/libcommon.lax/libexslt.a/libxslt_la-attrvt.o .libs/libcommon.lax/lt64-libxslt_la-attrvt.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxslt_la-documents.o .libs/libcommon.lax/lt65-libxslt_la-documents.o || cp .libs/libcommon.lax/libexslt.a/libxslt_la-documents.o .libs/libcommon.lax/lt65-libxslt_la-documents.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxslt_la-extensions.o .libs/libcommon.lax/lt66-libxslt_la-extensions.o || cp .libs/libcommon.lax/libexslt.a/libxslt_la-extensions.o .libs/libcommon.lax/lt66-libxslt_la-extensions.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxslt_la-extra.o .libs/libcommon.lax/lt67-libxslt_la-extra.o || cp .libs/libcommon.lax/libexslt.a/libxslt_la-extra.o .libs/libcommon.lax/lt67-libxslt_la-extra.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxslt_la-functions.o .libs/libcommon.lax/lt68-libxslt_la-functions.o || cp .libs/libcommon.lax/libexslt.a/libxslt_la-functions.o .libs/libcommon.lax/lt68-libxslt_la-functions.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxslt_la-imports.o .libs/libcommon.lax/lt69-libxslt_la-imports.o || cp .libs/libcommon.lax/libexslt.a/libxslt_la-imports.o .libs/libcommon.lax/lt69-libxslt_la-imports.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxslt_la-keys.o .libs/libcommon.lax/lt70-libxslt_la-keys.o || cp .libs/libcommon.lax/libexslt.a/libxslt_la-keys.o .libs/libcommon.lax/lt70-libxslt_la-keys.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxslt_la-namespaces.o .libs/libcommon.lax/lt71-libxslt_la-namespaces.o || cp .libs/libcommon.lax/libexslt.a/libxslt_la-namespaces.o .libs/libcommon.lax/lt71-libxslt_la-namespaces.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxslt_la-numbers.o .libs/libcommon.lax/lt72-libxslt_la-numbers.o || cp .libs/libcommon.lax/libexslt.a/libxslt_la-numbers.o .libs/libcommon.lax/lt72-libxslt_la-numbers.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxslt_la-pattern.o .libs/libcommon.lax/lt73-libxslt_la-pattern.o || cp .libs/libcommon.lax/libexslt.a/libxslt_la-pattern.o .libs/libcommon.lax/lt73-libxslt_la-pattern.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxslt_la-preproc.o .libs/libcommon.lax/lt74-libxslt_la-preproc.o || cp .libs/libcommon.lax/libexslt.a/libxslt_la-preproc.o .libs/libcommon.lax/lt74-libxslt_la-preproc.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxslt_la-security.o .libs/libcommon.lax/lt75-libxslt_la-security.o || cp .libs/libcommon.lax/libexslt.a/libxslt_la-security.o .libs/libcommon.lax/lt75-libxslt_la-security.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxslt_la-templates.o .libs/libcommon.lax/lt76-libxslt_la-templates.o || cp .libs/libcommon.lax/libexslt.a/libxslt_la-templates.o .libs/libcommon.lax/lt76-libxslt_la-templates.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxslt_la-transform.o .libs/libcommon.lax/lt77-libxslt_la-transform.o || cp .libs/libcommon.lax/libexslt.a/libxslt_la-transform.o .libs/libcommon.lax/lt77-libxslt_la-transform.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxslt_la-variables.o .libs/libcommon.lax/lt78-libxslt_la-variables.o || cp .libs/libcommon.lax/libexslt.a/libxslt_la-variables.o .libs/libcommon.lax/lt78-libxslt_la-variables.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxslt_la-xslt.o .libs/libcommon.lax/lt79-libxslt_la-xslt.o || cp .libs/libcommon.lax/libexslt.a/libxslt_la-xslt.o .libs/libcommon.lax/lt79-libxslt_la-xslt.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxslt_la-xsltlocale.o .libs/libcommon.lax/lt80-libxslt_la-xsltlocale.o || cp .libs/libcommon.lax/libexslt.a/libxslt_la-xsltlocale.o .libs/libcommon.lax/lt80-libxslt_la-xsltlocale.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/libxslt_la-xsltutils.o .libs/libcommon.lax/lt81-libxslt_la-xsltutils.o || cp .libs/libcommon.lax/libexslt.a/libxslt_la-xsltutils.o .libs/libcommon.lax/lt81-libxslt_la-xsltutils.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt1-libxml2_la-HTMLparser.o .libs/libcommon.lax/lt82-lt1-libxml2_la-HTMLparser.o || cp .libs/libcommon.lax/libexslt.a/lt1-libxml2_la-HTMLparser.o .libs/libcommon.lax/lt82-lt1-libxml2_la-HTMLparser.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt10-libxml2_la-globals.o .libs/libcommon.lax/lt83-lt10-libxml2_la-globals.o || cp .libs/libcommon.lax/libexslt.a/lt10-libxml2_la-globals.o .libs/libcommon.lax/lt83-lt10-libxml2_la-globals.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt11-libxml2_la-hash.o .libs/libcommon.lax/lt84-lt11-libxml2_la-hash.o || cp .libs/libcommon.lax/libexslt.a/lt11-libxml2_la-hash.o .libs/libcommon.lax/lt84-lt11-libxml2_la-hash.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt12-libxml2_la-list.o .libs/libcommon.lax/lt85-lt12-libxml2_la-list.o || cp .libs/libcommon.lax/libexslt.a/lt12-libxml2_la-list.o .libs/libcommon.lax/lt85-lt12-libxml2_la-list.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt13-libxml2_la-parser.o .libs/libcommon.lax/lt86-lt13-libxml2_la-parser.o || cp .libs/libcommon.lax/libexslt.a/lt13-libxml2_la-parser.o .libs/libcommon.lax/lt86-lt13-libxml2_la-parser.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt14-libxml2_la-parserInternals.o .libs/libcommon.lax/lt87-lt14-libxml2_la-parserInternals.o || cp .libs/libcommon.lax/libexslt.a/lt14-libxml2_la-parserInternals.o .libs/libcommon.lax/lt87-lt14-libxml2_la-parserInternals.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt15-libxml2_la-pattern.o .libs/libcommon.lax/lt88-lt15-libxml2_la-pattern.o || cp .libs/libcommon.lax/libexslt.a/lt15-libxml2_la-pattern.o .libs/libcommon.lax/lt88-lt15-libxml2_la-pattern.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt16-libxml2_la-relaxng.o .libs/libcommon.lax/lt89-lt16-libxml2_la-relaxng.o || cp .libs/libcommon.lax/libexslt.a/lt16-libxml2_la-relaxng.o .libs/libcommon.lax/lt89-lt16-libxml2_la-relaxng.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt17-libxml2_la-threads.o .libs/libcommon.lax/lt90-lt17-libxml2_la-threads.o || cp .libs/libcommon.lax/libexslt.a/lt17-libxml2_la-threads.o .libs/libcommon.lax/lt90-lt17-libxml2_la-threads.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt18-libxml2_la-tree.o .libs/libcommon.lax/lt91-lt18-libxml2_la-tree.o || cp .libs/libcommon.lax/libexslt.a/lt18-libxml2_la-tree.o .libs/libcommon.lax/lt91-lt18-libxml2_la-tree.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt19-libxml2_la-uri.o .libs/libcommon.lax/lt92-lt19-libxml2_la-uri.o || cp .libs/libcommon.lax/libexslt.a/lt19-libxml2_la-uri.o .libs/libcommon.lax/lt92-lt19-libxml2_la-uri.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt2-libxml2_la-HTMLtree.o .libs/libcommon.lax/lt93-lt2-libxml2_la-HTMLtree.o || cp .libs/libcommon.lax/libexslt.a/lt2-libxml2_la-HTMLtree.o .libs/libcommon.lax/lt93-lt2-libxml2_la-HTMLtree.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt20-libxml2_la-valid.o .libs/libcommon.lax/lt94-lt20-libxml2_la-valid.o || cp .libs/libcommon.lax/libexslt.a/lt20-libxml2_la-valid.o .libs/libcommon.lax/lt94-lt20-libxml2_la-valid.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt21-libxml2_la-xmlIO.o .libs/libcommon.lax/lt95-lt21-libxml2_la-xmlIO.o || cp .libs/libcommon.lax/libexslt.a/lt21-libxml2_la-xmlIO.o .libs/libcommon.lax/lt95-lt21-libxml2_la-xmlIO.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt22-libxml2_la-xmlmemory.o .libs/libcommon.lax/lt96-lt22-libxml2_la-xmlmemory.o || cp .libs/libcommon.lax/libexslt.a/lt22-libxml2_la-xmlmemory.o .libs/libcommon.lax/lt96-lt22-libxml2_la-xmlmemory.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt23-libxml2_la-xmlreader.o .libs/libcommon.lax/lt97-lt23-libxml2_la-xmlreader.o || cp .libs/libcommon.lax/libexslt.a/lt23-libxml2_la-xmlreader.o .libs/libcommon.lax/lt97-lt23-libxml2_la-xmlreader.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt24-libxml2_la-xmlregexp.o .libs/libcommon.lax/lt98-lt24-libxml2_la-xmlregexp.o || cp .libs/libcommon.lax/libexslt.a/lt24-libxml2_la-xmlregexp.o .libs/libcommon.lax/lt98-lt24-libxml2_la-xmlregexp.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt25-libxml2_la-xmlsave.o .libs/libcommon.lax/lt99-lt25-libxml2_la-xmlsave.o || cp .libs/libcommon.lax/libexslt.a/lt25-libxml2_la-xmlsave.o .libs/libcommon.lax/lt99-lt25-libxml2_la-xmlsave.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt26-libxml2_la-xmlschemas.o .libs/libcommon.lax/lt100-lt26-libxml2_la-xmlschemas.o || cp .libs/libcommon.lax/libexslt.a/lt26-libxml2_la-xmlschemas.o .libs/libcommon.lax/lt100-lt26-libxml2_la-xmlschemas.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt27-libxml2_la-xmlschemastypes.o .libs/libcommon.lax/lt101-lt27-libxml2_la-xmlschemastypes.o || cp .libs/libcommon.lax/libexslt.a/lt27-libxml2_la-xmlschemastypes.o .libs/libcommon.lax/lt101-lt27-libxml2_la-xmlschemastypes.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt28-libxml2_la-xmlstring.o .libs/libcommon.lax/lt102-lt28-libxml2_la-xmlstring.o || cp .libs/libcommon.lax/libexslt.a/lt28-libxml2_la-xmlstring.o .libs/libcommon.lax/lt102-lt28-libxml2_la-xmlstring.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt29-libxml2_la-xmlunicode.o .libs/libcommon.lax/lt103-lt29-libxml2_la-xmlunicode.o || cp .libs/libcommon.lax/libexslt.a/lt29-libxml2_la-xmlunicode.o .libs/libcommon.lax/lt103-lt29-libxml2_la-xmlunicode.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt3-libxml2_la-SAX2.o .libs/libcommon.lax/lt104-lt3-libxml2_la-SAX2.o || cp .libs/libcommon.lax/libexslt.a/lt3-libxml2_la-SAX2.o .libs/libcommon.lax/lt104-lt3-libxml2_la-SAX2.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt30-libxml2_la-xmlwriter.o .libs/libcommon.lax/lt105-lt30-libxml2_la-xmlwriter.o || cp .libs/libcommon.lax/libexslt.a/lt30-libxml2_la-xmlwriter.o .libs/libcommon.lax/lt105-lt30-libxml2_la-xmlwriter.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt31-libxml2_la-xpath.o .libs/libcommon.lax/lt106-lt31-libxml2_la-xpath.o || cp .libs/libcommon.lax/libexslt.a/lt31-libxml2_la-xpath.o .libs/libcommon.lax/lt106-lt31-libxml2_la-xpath.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt4-libxml2_la-chvalid.o .libs/libcommon.lax/lt107-lt4-libxml2_la-chvalid.o || cp .libs/libcommon.lax/libexslt.a/lt4-libxml2_la-chvalid.o .libs/libcommon.lax/lt107-lt4-libxml2_la-chvalid.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt5-libxml2_la-debugXML.o .libs/libcommon.lax/lt108-lt5-libxml2_la-debugXML.o || cp .libs/libcommon.lax/libexslt.a/lt5-libxml2_la-debugXML.o .libs/libcommon.lax/lt108-lt5-libxml2_la-debugXML.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt6-libxml2_la-dict.o .libs/libcommon.lax/lt109-lt6-libxml2_la-dict.o || cp .libs/libcommon.lax/libexslt.a/lt6-libxml2_la-dict.o .libs/libcommon.lax/lt109-lt6-libxml2_la-dict.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt7-libxml2_la-encoding.o .libs/libcommon.lax/lt110-lt7-libxml2_la-encoding.o || cp .libs/libcommon.lax/libexslt.a/lt7-libxml2_la-encoding.o .libs/libcommon.lax/lt110-lt7-libxml2_la-encoding.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt8-libxml2_la-entities.o .libs/libcommon.lax/lt111-lt8-libxml2_la-entities.o || cp .libs/libcommon.lax/libexslt.a/lt8-libxml2_la-entities.o .libs/libcommon.lax/lt111-lt8-libxml2_la-entities.o

libtool: link: ln .libs/libcommon.lax/libexslt.a/lt9-libxml2_la-error.o .libs/libcommon.lax/lt112-lt9-libxml2_la-error.o || cp .libs/libcommon.lax/libexslt.a/lt9-libxml2_la-error.o .libs/libcommon.lax/lt112-lt9-libxml2_la-error.o

libtool: link: ar cru .libs/libcommon.a .libs/libcommon_la-alignment.o .libs/libcommon_la-alph-in.o .libs/libcommon_la-alphabet.o .libs/libcommon_la-array.o .libs/libcommon_la-array-list.o .libs/libcommon_la-binary-search.o .libs/libcommon_la-binomial.o .libs/libcommon_la-build-hmm.o .libs/libcommon_la-buffer.o .libs/libcommon_la-ceqlogo.o .libs/libcommon_la-cisml.o .libs/libcommon_la-cisml-sax.o .libs/libcommon_la-clustalw-io.o .libs/libcommon_la-dp.o .libs/libcommon_la-dreme-sax.o .libs/libcommon_la-eps2png.o .libs/libcommon_la-empirical-qvalue.o .libs/libcommon_la-evomodel.o .libs/libcommon_la-fasta-io.o .libs/libcommon_la-fitevd.o .libs/libcommon_la-gendb.o .libs/libcommon_la-hash_table.o .libs/libcommon_la-heap.o .libs/libcommon_la-html-data.o .libs/libcommon_la-html-monolith.o .libs/libcommon_la-io.o .libs/libcommon_la-json-checker.o .libs/libcommon_la-json-reader.o .libs/libcommon_la-json-writer.o .libs/libcommon_la-karlin.o .libs/libcommon_la-linked-list.o .libs/libcommon_la-log-hmm.o .libs/libcommon_la-logodds.o .libs/libcommon_la-mast-util.o .libs/libcommon_la-match.o .libs/libcommon_la-matrix.o .libs/libcommon_la-mcast-match.o .libs/libcommon_la-meme-sax.o .libs/libcommon_la-metameme.o .libs/libcommon_la-mhmm.o .libs/libcommon_la-mhmms.o .libs/libcommon_la-mhmmscan.o .libs/libcommon_la-mhmm-state.o .libs/libcommon_la-motif-in.o .libs/libcommon_la-motif-in-common.o .libs/libcommon_la-motif-in-dreme-xml.o .libs/libcommon_la-motif-in-meme-html.o .libs/libcommon_la-motif-in-meme-json.o .libs/libcommon_la-motif-in-meme-text.o .libs/libcommon_la-motif-in-meme-xml.o .libs/libcommon_la-motif.o .libs/libcommon_la-motif_regexp.o .libs/libcommon_la-motifs.o .libs/libcommon_la-motiph-scoring.o .libs/libcommon_la-mtwist.o .libs/libcommon_la-object-list.o .libs/libcommon_la-order.o .libs/libcommon_la-data-block.o .libs/libcommon_la-data-block-reader.o .libs/libcommon_la-parser-message.o .libs/libcommon_la-prealigned-io.o .libs/libcommon_la-prior-reader-from-psp.o .libs/libcommon_la-prior-reader-from-wig.o .libs/libcommon_la-prior-dist.o .libs/libcommon_la-pssm.o .libs/libcommon_la-pssm-distr.o .libs/libcommon_la-qvalue.o .libs/libcommon_la-ranksum_test.o .libs/libcommon_la-rdb-matrix.o .libs/libcommon_la-read-mhmm.o .libs/libcommon_la-read_sequence.o .libs/libcommon_la-red-black-tree.o .libs/libcommon_la-regex-utils.o .libs/libcommon_la-regress.o .libs/libcommon_la-reservoir.o .libs/libcommon_la-sax-parser-utils.o .libs/libcommon_la-scanned-sequence.o .libs/libcommon_la-scored-sites.o .libs/libcommon_la-seq.o .libs/libcommon_la-seq-reader-from-fasta.o .libs/libcommon_la-simple-getopt.o .libs/libcommon_la-spearman-rank-correlation.o .libs/libcommon_la-string-builder.o .libs/libcommon_la-string-list.o .libs/libcommon_la-string-match.o .libs/libcommon_la-subst-matrix.o .libs/libcommon_la-substmatrix-table.o .libs/libcommon_la-transfac.o .libs/libcommon_la-tree.o .libs/libcommon_la-utils.o .libs/libcommon_la-wiggle-reader.o .libs/libcommon_la-write-mhmm.o .libs/libcommon_la-xlate-in.o .libs/libcommon_la-xml-out.o .libs/libcommon_la-xml-util.o .libs/libcommon.lax/libxml2.a/libxml2_la-HTMLparser.o .libs/libcommon.lax/libxml2.a/libxml2_la-HTMLtree.o .libs/libcommon.lax/libxml2.a/libxml2_la-SAX2.o .libs/libcommon.lax/libxml2.a/libxml2_la-chvalid.o .libs/libcommon.lax/libxml2.a/libxml2_la-debugXML.o .libs/libcommon.lax/libxml2.a/libxml2_la-dict.o .libs/libcommon.lax/libxml2.a/libxml2_la-encoding.o .libs/libcommon.lax/libxml2.a/libxml2_la-entities.o .libs/libcommon.lax/libxml2.a/libxml2_la-error.o .libs/libcommon.lax/libxml2.a/libxml2_la-globals.o .libs/libcommon.lax/libxml2.a/libxml2_la-hash.o .libs/libcommon.lax/libxml2.a/libxml2_la-list.o .libs/libcommon.lax/libxml2.a/libxml2_la-parser.o .libs/libcommon.lax/libxml2.a/libxml2_la-parserInternals.o .libs/libcommon.lax/libxml2.a/libxml2_la-pattern.o .libs/libcommon.lax/libxml2.a/libxml2_la-relaxng.o .libs/libcommon.lax/libxml2.a/libxml2_la-threads.o .libs/libcommon.lax/libxml2.a/libxml2_la-tree.o .libs/libcommon.lax/libxml2.a/libxml2_la-uri.o .libs/libcommon.lax/libxml2.a/libxml2_la-valid.o .libs/libcommon.lax/libxml2.a/libxml2_la-xmlIO.o .libs/libcommon.lax/libxml2.a/libxml2_la-xmlmemory.o .libs/libcommon.lax/libxml2.a/libxml2_la-xmlreader.o .libs/libcommon.lax/libxml2.a/libxml2_la-xmlregexp.o .libs/libcommon.lax/libxml2.a/libxml2_la-xmlsave.o .libs/libcommon.lax/libxml2.a/libxml2_la-xmlschemas.o .libs/libcommon.lax/libxml2.a/libxml2_la-xmlschemastypes.o .libs/libcommon.lax/libxml2.a/libxml2_la-xmlstring.o .libs/libcommon.lax/libxml2.a/libxml2_la-xmlunicode.o .libs/libcommon.lax/libxml2.a/libxml2_la-xmlwriter.o .libs/libcommon.lax/libxml2.a/libxml2_la-xpath.o .libs/libcommon.lax/lt1-libxml2_la-HTMLparser.o .libs/libcommon.lax/lt2-libxml2_la-HTMLtree.o .libs/libcommon.lax/lt3-libxml2_la-SAX2.o .libs/libcommon.lax/lt4-libxml2_la-chvalid.o .libs/libcommon.lax/lt5-libxml2_la-debugXML.o .libs/libcommon.lax/lt6-libxml2_la-dict.o .libs/libcommon.lax/lt7-libxml2_la-encoding.o .libs/libcommon.lax/lt8-libxml2_la-entities.o .libs/libcommon.lax/lt9-libxml2_la-error.o .libs/libcommon.lax/lt10-libxml2_la-globals.o .libs/libcommon.lax/lt11-libxml2_la-hash.o .libs/libcommon.lax/lt12-libxml2_la-list.o .libs/libcommon.lax/lt13-libxml2_la-parser.o .libs/libcommon.lax/lt14-libxml2_la-parserInternals.o .libs/libcommon.lax/lt15-libxml2_la-pattern.o .libs/libcommon.lax/lt16-libxml2_la-relaxng.o .libs/libcommon.lax/lt17-libxml2_la-threads.o .libs/libcommon.lax/lt18-libxml2_la-tree.o .libs/libcommon.lax/lt19-libxml2_la-uri.o .libs/libcommon.lax/lt20-libxml2_la-valid.o .libs/libcommon.lax/lt21-libxml2_la-xmlIO.o .libs/libcommon.lax/lt22-libxml2_la-xmlmemory.o .libs/libcommon.lax/lt23-libxml2_la-xmlreader.o .libs/libcommon.lax/lt24-libxml2_la-xmlregexp.o .libs/libcommon.lax/lt25-libxml2_la-xmlsave.o .libs/libcommon.lax/lt26-libxml2_la-xmlschemas.o .libs/libcommon.lax/lt27-libxml2_la-xmlschemastypes.o .libs/libcommon.lax/lt28-libxml2_la-xmlstring.o .libs/libcommon.lax/lt29-libxml2_la-xmlunicode.o .libs/libcommon.lax/lt30-libxml2_la-xmlwriter.o .libs/libcommon.lax/lt31-libxml2_la-xpath.o .libs/libcommon.lax/libxslt.a/libxslt_la-attributes.o .libs/libcommon.lax/libxslt.a/libxslt_la-attrvt.o .libs/libcommon.lax/libxslt.a/libxslt_la-documents.o .libs/libcommon.lax/libxslt.a/libxslt_la-extensions.o .libs/libcommon.lax/libxslt.a/libxslt_la-extra.o .libs/libcommon.lax/libxslt.a/libxslt_la-functions.o .libs/libcommon.lax/libxslt.a/libxslt_la-imports.o .libs/libcommon.lax/libxslt.a/libxslt_la-keys.o .libs/libcommon.lax/libxslt.a/libxslt_la-namespaces.o .libs/libcommon.lax/libxslt.a/libxslt_la-numbers.o .libs/libcommon.lax/libxslt.a/libxslt_la-pattern.o .libs/libcommon.lax/libxslt.a/libxslt_la-preproc.o .libs/libcommon.lax/libxslt.a/libxslt_la-security.o .libs/libcommon.lax/libxslt.a/libxslt_la-templates.o .libs/libcommon.lax/libxslt.a/libxslt_la-transform.o .libs/libcommon.lax/libxslt.a/libxslt_la-variables.o .libs/libcommon.lax/libxslt.a/libxslt_la-xslt.o .libs/libcommon.lax/libxslt.a/libxslt_la-xsltlocale.o .libs/libcommon.lax/libxslt.a/libxslt_la-xsltutils.o .libs/libcommon.lax/libexslt.a/libexslt_la-common.o .libs/libcommon.lax/libexslt.a/libexslt_la-date.o .libs/libcommon.lax/libexslt.a/libexslt_la-dynamic.o .libs/libcommon.lax/libexslt.a/libexslt_la-exslt.o .libs/libcommon.lax/libexslt.a/libexslt_la-functions.o .libs/libcommon.lax/libexslt.a/libexslt_la-math.o .libs/libcommon.lax/libexslt.a/libexslt_la-saxon.o .libs/libcommon.lax/libexslt.a/libexslt_la-sets.o .libs/libcommon.lax/libexslt.a/libexslt_la-strings.o .libs/libcommon.lax/lt32-libxml2_la-HTMLparser.o .libs/libcommon.lax/lt33-libxml2_la-HTMLtree.o .libs/libcommon.lax/lt34-libxml2_la-SAX2.o .libs/libcommon.lax/lt35-libxml2_la-chvalid.o .libs/libcommon.lax/lt36-libxml2_la-debugXML.o .libs/libcommon.lax/lt37-libxml2_la-dict.o .libs/libcommon.lax/lt38-libxml2_la-encoding.o .libs/libcommon.lax/lt39-libxml2_la-entities.o .libs/libcommon.lax/lt40-libxml2_la-error.o .libs/libcommon.lax/lt41-libxml2_la-globals.o .libs/libcommon.lax/lt42-libxml2_la-hash.o .libs/libcommon.lax/lt43-libxml2_la-list.o .libs/libcommon.lax/lt44-libxml2_la-parser.o .libs/libcommon.lax/lt45-libxml2_la-parserInternals.o .libs/libcommon.lax/lt46-libxml2_la-pattern.o .libs/libcommon.lax/lt47-libxml2_la-relaxng.o .libs/libcommon.lax/lt48-libxml2_la-threads.o .libs/libcommon.lax/lt49-libxml2_la-tree.o .libs/libcommon.lax/lt50-libxml2_la-uri.o .libs/libcommon.lax/lt51-libxml2_la-valid.o .libs/libcommon.lax/lt52-libxml2_la-xmlIO.o .libs/libcommon.lax/lt53-libxml2_la-xmlmemory.o .libs/libcommon.lax/lt54-libxml2_la-xmlreader.o .libs/libcommon.lax/lt55-libxml2_la-xmlregexp.o .libs/libcommon.lax/lt56-libxml2_la-xmlsave.o .libs/libcommon.lax/lt57-libxml2_la-xmlschemas.o .libs/libcommon.lax/lt58-libxml2_la-xmlschemastypes.o .libs/libcommon.lax/lt59-libxml2_la-xmlstring.o .libs/libcommon.lax/lt60-libxml2_la-xmlunicode.o .libs/libcommon.lax/lt61-libxml2_la-xmlwriter.o .libs/libcommon.lax/lt62-libxml2_la-xpath.o .libs/libcommon.lax/lt63-libxslt_la-attributes.o .libs/libcommon.lax/lt64-libxslt_la-attrvt.o .libs/libcommon.lax/lt65-libxslt_la-documents.o .libs/libcommon.lax/lt66-libxslt_la-extensions.o .libs/libcommon.lax/lt67-libxslt_la-extra.o .libs/libcommon.lax/lt68-libxslt_la-functions.o .libs/libcommon.lax/lt69-libxslt_la-imports.o .libs/libcommon.lax/lt70-libxslt_la-keys.o .libs/libcommon.lax/lt71-libxslt_la-namespaces.o .libs/libcommon.lax/lt72-libxslt_la-numbers.o .libs/libcommon.lax/lt73-libxslt_la-pattern.o .libs/libcommon.lax/lt74-libxslt_la-preproc.o .libs/libcommon.lax/lt75-libxslt_la-security.o .libs/libcommon.lax/lt76-libxslt_la-templates.o .libs/libcommon.lax/lt77-libxslt_la-transform.o .libs/libcommon.lax/lt78-libxslt_la-variables.o .libs/libcommon.lax/lt79-libxslt_la-xslt.o .libs/libcommon.lax/lt80-libxslt_la-xsltlocale.o .libs/libcommon.lax/lt81-libxslt_la-xsltutils.o .libs/libcommon.lax/lt82-lt1-libxml2_la-HTMLparser.o .libs/libcommon.lax/lt83-lt10-libxml2_la-globals.o .libs/libcommon.lax/lt84-lt11-libxml2_la-hash.o .libs/libcommon.lax/lt85-lt12-libxml2_la-list.o .libs/libcommon.lax/lt86-lt13-libxml2_la-parser.o .libs/libcommon.lax/lt87-lt14-libxml2_la-parserInternals.o .libs/libcommon.lax/lt88-lt15-libxml2_la-pattern.o .libs/libcommon.lax/lt89-lt16-libxml2_la-relaxng.o .libs/libcommon.lax/lt90-lt17-libxml2_la-threads.o .libs/libcommon.lax/lt91-lt18-libxml2_la-tree.o .libs/libcommon.lax/lt92-lt19-libxml2_la-uri.o .libs/libcommon.lax/lt93-lt2-libxml2_la-HTMLtree.o .libs/libcommon.lax/lt94-lt20-libxml2_la-valid.o .libs/libcommon.lax/lt95-lt21-libxml2_la-xmlIO.o .libs/libcommon.lax/lt96-lt22-libxml2_la-xmlmemory.o .libs/libcommon.lax/lt97-lt23-libxml2_la-xmlreader.o .libs/libcommon.lax/lt98-lt24-libxml2_la-xmlregexp.o .libs/libcommon.lax/lt99-lt25-libxml2_la-xmlsave.o .libs/libcommon.lax/lt100-lt26-libxml2_la-xmlschemas.o .libs/libcommon.lax/lt101-lt27-libxml2_la-xmlschemastypes.o .libs/libcommon.lax/lt102-lt28-libxml2_la-xmlstring.o .libs/libcommon.lax/lt103-lt29-libxml2_la-xmlunicode.o .libs/libcommon.lax/lt104-lt3-libxml2_la-SAX2.o .libs/libcommon.lax/lt105-lt30-libxml2_la-xmlwriter.o .libs/libcommon.lax/lt106-lt31-libxml2_la-xpath.o .libs/libcommon.lax/lt107-lt4-libxml2_la-chvalid.o .libs/libcommon.lax/lt108-lt5-libxml2_la-debugXML.o .libs/libcommon.lax/lt109-lt6-libxml2_la-dict.o .libs/libcommon.lax/lt110-lt7-libxml2_la-encoding.o .libs/libcommon.lax/lt111-lt8-libxml2_la-entities.o .libs/libcommon.lax/lt112-lt9-libxml2_la-error.o

ar: `u' modifier ignored since `D' is the default (see `U')

libtool: link: ranlib .libs/libcommon.a

libtool: link: rm -fr .libs/libcommon.lax .libs/libcommon.lax

libtool: link: ( cd ".libs" && rm -f "libcommon.la" && ln -s "../libcommon.la" "libcommon.la" )

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT alphtype-alphtype.o -MD -MP -MF .deps/alphtype-alphtype.Tpo -c -o alphtype-alphtype.o `test -f 'alphtype.c' || echo './'`alphtype.c

mv -f .deps/alphtype-alphtype.Tpo .deps/alphtype-alphtype.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o alphtype alphtype-alphtype.o libcommon.la -lz -lm

libtool: link: gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o alphtype alphtype-alphtype.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ama-ama.o -MD -MP -MF .deps/ama-ama.Tpo -c -o ama-ama.o `test -f 'ama.c' || echo './'`ama.c

mv -f .deps/ama-ama.Tpo .deps/ama-ama.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o ama ama-ama.o libcommon.la ../src/libxml2/libxml2.la -lz -lm

libtool: link: gcc -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o ama ama-ama.o ./.libs/libcommon.a ../src/libxml2/.libs/libxml2.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ame-ame.o -MD -MP -MF .deps/ame-ame.Tpo -c -o ame-ame.o `test -f 'ame.c' || echo './'`ame.c

ame.c: In function 'rsc_getopt':

ame.c:538:30: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]

args.commandline = (char*) malloc(sizeof(char)*(line_length+argc));

^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

In file included from ame.c:18:0:

/usr/include/stdlib.h:539:14: note: in a call to allocation function 'malloc' declared here

extern void *malloc (size_t __size) __THROW __attribute_malloc__ __wur;

^~~~~~

mv -f .deps/ame-ame.Tpo .deps/ame-ame.Po

gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ame-ramen_scan.o -MD -MP -MF .deps/ame-ramen_scan.Tpo -c -o ame-ramen_scan.o `test -f 'ramen_scan.c' || echo './'`ramen_scan.c

mv -f .deps/ame-ramen_scan.Tpo .deps/ame-ramen_scan.Po

gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ame-fisher_exact.o -MD -MP -MF .deps/ame-fisher_exact.Tpo -c -o ame-fisher_exact.o `test -f 'fisher_exact.c' || echo './'`fisher_exact.c

mv -f .deps/ame-fisher_exact.Tpo .deps/ame-fisher_exact.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -DMAIN -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o ame ame-ame.o ame-ramen_scan.o ame-fisher_exact.o libcommon.la ../src/libxml2/libxml2.la -lm -lz -lm

libtool: link: gcc -DMAIN -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o ame ame-ame.o ame-ramen_scan.o ame-fisher_exact.o ./.libs/libcommon.a ../src/libxml2/.libs/libxml2.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -DCL_MAIN -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ceqlogo-ceqlogo.o -MD -MP -MF .deps/ceqlogo-ceqlogo.Tpo -c -o ceqlogo-ceqlogo.o `test -f 'ceqlogo.c' || echo './'`ceqlogo.c

mv -f .deps/ceqlogo-ceqlogo.Tpo .deps/ceqlogo-ceqlogo.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -DCL_MAIN -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o ceqlogo ceqlogo-ceqlogo.o libcommon.la ../src/libxml2/libxml2.la -lz -lm

libtool: link: gcc -DCL_MAIN -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o ceqlogo ceqlogo-ceqlogo.o ./.libs/libcommon.a ../src/libxml2/.libs/libxml2.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT centrimo-centrimo.o -MD -MP -MF .deps/centrimo-centrimo.Tpo -c -o centrimo-centrimo.o `test -f 'centrimo.c' || echo './'`centrimo.c

mv -f .deps/centrimo-centrimo.Tpo .deps/centrimo-centrimo.Po

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT centrimo-fisher_exact.o -MD -MP -MF .deps/centrimo-fisher_exact.Tpo -c -o centrimo-fisher_exact.o `test -f 'fisher_exact.c' || echo './'`fisher_exact.c

mv -f .deps/centrimo-fisher_exact.Tpo .deps/centrimo-fisher_exact.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o centrimo centrimo-centrimo.o centrimo-fisher_exact.o libcommon.la ../src/libxml2/libxml2.la -lz -lm

libtool: link: gcc -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o centrimo centrimo-centrimo.o centrimo-fisher_exact.o ./.libs/libcommon.a ../src/libxml2/.libs/libxml2.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT clustalw2fasta-clustalw2fasta.o -MD -MP -MF .deps/clustalw2fasta-clustalw2fasta.Tpo -c -o clustalw2fasta-clustalw2fasta.o `test -f 'clustalw2fasta.c' || echo './'`clustalw2fasta.c

mv -f .deps/clustalw2fasta-clustalw2fasta.Tpo .deps/clustalw2fasta-clustalw2fasta.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o clustalw2fasta clustalw2fasta-clustalw2fasta.o libcommon.la -lz -lm

libtool: link: gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o clustalw2fasta clustalw2fasta-clustalw2fasta.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT clustalw2phylip-clustalw2phylip.o -MD -MP -MF .deps/clustalw2phylip-clustalw2phylip.Tpo -c -o clustalw2phylip-clustalw2phylip.o `test -f 'clustalw2phylip.c' || echo './'`clustalw2phylip.c

mv -f .deps/clustalw2phylip-clustalw2phylip.Tpo .deps/clustalw2phylip-clustalw2phylip.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o clustalw2phylip clustalw2phylip-clustalw2phylip.o libcommon.la -lz -lm

libtool: link: gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o clustalw2phylip clustalw2phylip-clustalw2phylip.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT compute_prior_dist-compute-prior-dist.o -MD -MP -MF .deps/compute_prior_dist-compute-prior-dist.Tpo -c -o compute_prior_dist-compute-prior-dist.o `test -f 'compute-prior-dist.c' || echo './'`compute-prior-dist.c

mv -f .deps/compute_prior_dist-compute-prior-dist.Tpo .deps/compute_prior_dist-compute-prior-dist.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o compute-prior-dist compute_prior_dist-compute-prior-dist.o libcommon.la -lz -lm

libtool: link: gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o compute-prior-dist compute_prior_dist-compute-prior-dist.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT compute_uniform_priors-compute-uniform-priors.o -MD -MP -MF .deps/compute_uniform_priors-compute-uniform-priors.Tpo -c -o compute_uniform_priors-compute-uniform-priors.o `test -f 'compute-uniform-priors.c' || echo './'`compute-uniform-priors.c

mv -f .deps/compute_uniform_priors-compute-uniform-priors.Tpo .deps/compute_uniform_priors-compute-uniform-priors.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o compute-uniform-priors compute_uniform_priors-compute-uniform-priors.o libcommon.la -lz -lm

libtool: link: gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o compute-uniform-priors compute_uniform_priors-compute-uniform-priors.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT create_priors-create-priors.o -MD -MP -MF .deps/create_priors-create-priors.Tpo -c -o create_priors-create-priors.o `test -f 'create-priors.c' || echo './'`create-priors.c

mv -f .deps/create_priors-create-priors.Tpo .deps/create_priors-create-priors.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o create-priors create_priors-create-priors.o libcommon.la -lz -lz -lm

libtool: link: gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o create-priors create_priors-create-priors.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT fasta_get_markov-fasta-get-markov.o -MD -MP -MF .deps/fasta_get_markov-fasta-get-markov.Tpo -c -o fasta_get_markov-fasta-get-markov.o `test -f 'fasta-get-markov.c' || echo './'`fasta-get-markov.c

mv -f .deps/fasta_get_markov-fasta-get-markov.Tpo .deps/fasta_get_markov-fasta-get-markov.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o fasta-get-markov fasta_get_markov-fasta-get-markov.o libcommon.la -lz -lm

libtool: link: gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o fasta-get-markov fasta_get_markov-fasta-get-markov.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT fasta_shuffle_letters-fasta-shuffle-letters.o -MD -MP -MF .deps/fasta_shuffle_letters-fasta-shuffle-letters.Tpo -c -o fasta_shuffle_letters-fasta-shuffle-letters.o `test -f 'fasta-shuffle-letters.c' || echo './'`fasta-shuffle-letters.c

mv -f .deps/fasta_shuffle_letters-fasta-shuffle-letters.Tpo .deps/fasta_shuffle_letters-fasta-shuffle-letters.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT fasta_shuffle_letters-ushuffle.o -MD -MP -MF .deps/fasta_shuffle_letters-ushuffle.Tpo -c -o fasta_shuffle_letters-ushuffle.o `test -f 'ushuffle.c' || echo './'`ushuffle.c

mv -f .deps/fasta_shuffle_letters-ushuffle.Tpo .deps/fasta_shuffle_letters-ushuffle.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o fasta-shuffle-letters fasta_shuffle_letters-fasta-shuffle-letters.o fasta_shuffle_letters-ushuffle.o libcommon.la -lz -lm

libtool: link: gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o fasta-shuffle-letters fasta_shuffle_letters-fasta-shuffle-letters.o fasta_shuffle_letters-ushuffle.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT fimo-fimo.o -MD -MP -MF .deps/fimo-fimo.Tpo -c -o fimo-fimo.o `test -f 'fimo.c' || echo './'`fimo.c

mv -f .deps/fimo-fimo.Tpo .deps/fimo-fimo.Po

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT fimo-fimo-output.o -MD -MP -MF .deps/fimo-fimo-output.Tpo -c -o fimo-fimo-output.o `test -f 'fimo-output.c' || echo './'`fimo-output.c

mv -f .deps/fimo-fimo-output.Tpo .deps/fimo-fimo-output.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o fimo fimo-fimo.o fimo-fimo-output.o libcommon.la ../src/libxml2/libxml2.la -lz -lm

libtool: link: gcc -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o fimo fimo-fimo.o fimo-fimo-output.o ./.libs/libcommon.a ../src/libxml2/.libs/libxml2.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -DFE_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT fisher_exact-fisher_exact.o -MD -MP -MF .deps/fisher_exact-fisher_exact.Tpo -c -o fisher_exact-fisher_exact.o `test -f 'fisher_exact.c' || echo './'`fisher_exact.c

mv -f .deps/fisher_exact-fisher_exact.Tpo .deps/fisher_exact-fisher_exact.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -DFE_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o fisher_exact fisher_exact-fisher_exact.o libcommon.la -lz -lm

libtool: link: gcc -DFE_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o fisher_exact fisher_exact-fisher_exact.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT fitevd-fitevd.o -MD -MP -MF .deps/fitevd-fitevd.Tpo -c -o fitevd-fitevd.o `test -f 'fitevd.c' || echo './'`fitevd.c

fitevd.c: In function 'fit_score_distribution':

fitevd.c:867:14: warning: '%.2f' directive writing between 4 and 313 bytes into a region of size between 0 and 3 [-Wformat-overflow=]

"Unable to estimate E-values because they don't follow "

^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

fitevd.c:868:58: note: format string is defined here

"an exponential distribution (mu1 %.2f, mu2 %.2f).",

^~~~

In file included from /usr/include/stdio.h:862:0,

from fitevd.h:3,

from fitevd.c:70:

/usr/include/x86_64-linux-gnu/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 104 and 722 bytes into a destination of size 100

return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,

^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

__bos (__s), __fmt, __va_arg_pack ());

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

mv -f .deps/fitevd-fitevd.Tpo .deps/fitevd-fitevd.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o fitevd fitevd-fitevd.o libcommon.la -lz -lm

libtool: link: gcc -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o fitevd fitevd-fitevd.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT gendb-gendb.o -MD -MP -MF .deps/gendb-gendb.Tpo -c -o gendb-gendb.o `test -f 'gendb.c' || echo './'`gendb.c

mv -f .deps/gendb-gendb.Tpo .deps/gendb-gendb.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o gendb gendb-gendb.o libcommon.la -lz -lm

libtool: link: gcc -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o gendb gendb-gendb.o ./.libs/libcommon.a -lz -lm

depbase=`echo getsize.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT getsize.o -MD -MP -MF $depbase.Tpo -c -o getsize.o getsize.c &&\

mv -f $depbase.Tpo $depbase.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o getsize getsize.o libcommon.la -lz -lm

libtool: link: gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o getsize getsize.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2-glam2_alphabet.o -MD -MP -MF .deps/glam2-glam2_alphabet.Tpo -c -o glam2-glam2_alphabet.o `test -f 'glam2_alphabet.c' || echo './'`glam2_alphabet.c

mv -f .deps/glam2-glam2_alphabet.Tpo .deps/glam2-glam2_alphabet.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2-glam2_args.o -MD -MP -MF .deps/glam2-glam2_args.Tpo -c -o glam2-glam2_args.o `test -f 'glam2_args.c' || echo './'`glam2_args.c

mv -f .deps/glam2-glam2_args.Tpo .deps/glam2-glam2_args.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2-glam2_column_sample.o -MD -MP -MF .deps/glam2-glam2_column_sample.Tpo -c -o glam2-glam2_column_sample.o `test -f 'glam2_column_sample.c' || echo './'`glam2_column_sample.c

mv -f .deps/glam2-glam2_column_sample.Tpo .deps/glam2-glam2_column_sample.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2-glam2_dirichlet.o -MD -MP -MF .deps/glam2-glam2_dirichlet.Tpo -c -o glam2-glam2_dirichlet.o `test -f 'glam2_dirichlet.c' || echo './'`glam2_dirichlet.c

mv -f .deps/glam2-glam2_dirichlet.Tpo .deps/glam2-glam2_dirichlet.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2-glam2_dna_prior.o -MD -MP -MF .deps/glam2-glam2_dna_prior.Tpo -c -o glam2-glam2_dna_prior.o `test -f 'glam2_dna_prior.c' || echo './'`glam2_dna_prior.c

mv -f .deps/glam2-glam2_dna_prior.Tpo .deps/glam2-glam2_dna_prior.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2-glam2_fasta.o -MD -MP -MF .deps/glam2-glam2_fasta.Tpo -c -o glam2-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c

mv -f .deps/glam2-glam2_fasta.Tpo .deps/glam2-glam2_fasta.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2-glam2_glam2.o -MD -MP -MF .deps/glam2-glam2_glam2.Tpo -c -o glam2-glam2_glam2.o `test -f 'glam2_glam2.c' || echo './'`glam2_glam2.c

mv -f .deps/glam2-glam2_glam2.Tpo .deps/glam2-glam2_glam2.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2-glam2_glam2_aln.o -MD -MP -MF .deps/glam2-glam2_glam2_aln.Tpo -c -o glam2-glam2_glam2_aln.o `test -f 'glam2_glam2_aln.c' || echo './'`glam2_glam2_aln.c

mv -f .deps/glam2-glam2_glam2_aln.Tpo .deps/glam2-glam2_glam2_aln.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2-glam2_init.o -MD -MP -MF .deps/glam2-glam2_init.Tpo -c -o glam2-glam2_init.o `test -f 'glam2_init.c' || echo './'`glam2_init.c

mv -f .deps/glam2-glam2_init.Tpo .deps/glam2-glam2_init.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2-glam2_output.o -MD -MP -MF .deps/glam2-glam2_output.Tpo -c -o glam2-glam2_output.o `test -f 'glam2_output.c' || echo './'`glam2_output.c

mv -f .deps/glam2-glam2_output.Tpo .deps/glam2-glam2_output.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2-glam2_recode3_20comp.o -MD -MP -MF .deps/glam2-glam2_recode3_20comp.Tpo -c -o glam2-glam2_recode3_20comp.o `test -f 'glam2_recode3_20comp.c' || echo './'`glam2_recode3_20comp.c

mv -f .deps/glam2-glam2_recode3_20comp.Tpo .deps/glam2-glam2_recode3_20comp.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2-glam2_site_sample.o -MD -MP -MF .deps/glam2-glam2_site_sample.Tpo -c -o glam2-glam2_site_sample.o `test -f 'glam2_site_sample.c' || echo './'`glam2_site_sample.c

mv -f .deps/glam2-glam2_site_sample.Tpo .deps/glam2-glam2_site_sample.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2-glam2_util.o -MD -MP -MF .deps/glam2-glam2_util.Tpo -c -o glam2-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c

mv -f .deps/glam2-glam2_util.Tpo .deps/glam2-glam2_util.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o glam2 glam2-glam2_alphabet.o glam2-glam2_args.o glam2-glam2_column_sample.o glam2-glam2_dirichlet.o glam2-glam2_dna_prior.o glam2-glam2_fasta.o glam2-glam2_glam2.o glam2-glam2_glam2_aln.o glam2-glam2_init.o glam2-glam2_output.o glam2-glam2_recode3_20comp.o glam2-glam2_site_sample.o glam2-glam2_util.o libcommon.la -lz -lm

libtool: link: gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o glam2 glam2-glam2_alphabet.o glam2-glam2_args.o glam2-glam2_column_sample.o glam2-glam2_dirichlet.o glam2-glam2_dna_prior.o glam2-glam2_fasta.o glam2-glam2_glam2.o glam2-glam2_glam2_aln.o glam2-glam2_init.o glam2-glam2_output.o glam2-glam2_recode3_20comp.o glam2-glam2_site_sample.o glam2-glam2_util.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2format-glam2_glam2format.o -MD -MP -MF .deps/glam2format-glam2_glam2format.Tpo -c -o glam2format-glam2_glam2format.o `test -f 'glam2_glam2format.c' || echo './'`glam2_glam2format.c

mv -f .deps/glam2format-glam2_glam2format.Tpo .deps/glam2format-glam2_glam2format.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2format-glam2_alignment.o -MD -MP -MF .deps/glam2format-glam2_alignment.Tpo -c -o glam2format-glam2_alignment.o `test -f 'glam2_alignment.c' || echo './'`glam2_alignment.c

mv -f .deps/glam2format-glam2_alignment.Tpo .deps/glam2format-glam2_alignment.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2format-glam2_fasta.o -MD -MP -MF .deps/glam2format-glam2_fasta.Tpo -c -o glam2format-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c

mv -f .deps/glam2format-glam2_fasta.Tpo .deps/glam2format-glam2_fasta.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2format-glam2_util.o -MD -MP -MF .deps/glam2format-glam2_util.Tpo -c -o glam2format-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c

mv -f .deps/glam2format-glam2_util.Tpo .deps/glam2format-glam2_util.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o glam2format glam2format-glam2_glam2format.o glam2format-glam2_alignment.o glam2format-glam2_fasta.o glam2format-glam2_util.o libcommon.la -lz -lm

libtool: link: gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o glam2format glam2format-glam2_glam2format.o glam2format-glam2_alignment.o glam2format-glam2_fasta.o glam2format-glam2_util.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2mask-glam2_glam2mask.o -MD -MP -MF .deps/glam2mask-glam2_glam2mask.Tpo -c -o glam2mask-glam2_glam2mask.o `test -f 'glam2_glam2mask.c' || echo './'`glam2_glam2mask.c

mv -f .deps/glam2mask-glam2_glam2mask.Tpo .deps/glam2mask-glam2_glam2mask.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2mask-glam2_alignment.o -MD -MP -MF .deps/glam2mask-glam2_alignment.Tpo -c -o glam2mask-glam2_alignment.o `test -f 'glam2_alignment.c' || echo './'`glam2_alignment.c

mv -f .deps/glam2mask-glam2_alignment.Tpo .deps/glam2mask-glam2_alignment.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2mask-glam2_fasta.o -MD -MP -MF .deps/glam2mask-glam2_fasta.Tpo -c -o glam2mask-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c

mv -f .deps/glam2mask-glam2_fasta.Tpo .deps/glam2mask-glam2_fasta.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2mask-glam2_util.o -MD -MP -MF .deps/glam2mask-glam2_util.Tpo -c -o glam2mask-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c

mv -f .deps/glam2mask-glam2_util.Tpo .deps/glam2mask-glam2_util.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o glam2mask glam2mask-glam2_glam2mask.o glam2mask-glam2_alignment.o glam2mask-glam2_fasta.o glam2mask-glam2_util.o libcommon.la -lz -lm

libtool: link: gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o glam2mask glam2mask-glam2_glam2mask.o glam2mask-glam2_alignment.o glam2mask-glam2_fasta.o glam2mask-glam2_util.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2scan-glam2_alignment.o -MD -MP -MF .deps/glam2scan-glam2_alignment.Tpo -c -o glam2scan-glam2_alignment.o `test -f 'glam2_alignment.c' || echo './'`glam2_alignment.c

mv -f .deps/glam2scan-glam2_alignment.Tpo .deps/glam2scan-glam2_alignment.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2scan-glam2_alphabet.o -MD -MP -MF .deps/glam2scan-glam2_alphabet.Tpo -c -o glam2scan-glam2_alphabet.o `test -f 'glam2_alphabet.c' || echo './'`glam2_alphabet.c

mv -f .deps/glam2scan-glam2_alphabet.Tpo .deps/glam2scan-glam2_alphabet.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2scan-glam2_dna_prior.o -MD -MP -MF .deps/glam2scan-glam2_dna_prior.Tpo -c -o glam2scan-glam2_dna_prior.o `test -f 'glam2_dna_prior.c' || echo './'`glam2_dna_prior.c

mv -f .deps/glam2scan-glam2_dna_prior.Tpo .deps/glam2scan-glam2_dna_prior.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2scan-glam2_fasta.o -MD -MP -MF .deps/glam2scan-glam2_fasta.Tpo -c -o glam2scan-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c

mv -f .deps/glam2scan-glam2_fasta.Tpo .deps/glam2scan-glam2_fasta.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2scan-glam2_dirichlet.o -MD -MP -MF .deps/glam2scan-glam2_dirichlet.Tpo -c -o glam2scan-glam2_dirichlet.o `test -f 'glam2_dirichlet.c' || echo './'`glam2_dirichlet.c

mv -f .deps/glam2scan-glam2_dirichlet.Tpo .deps/glam2scan-glam2_dirichlet.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2scan-glam2_heap.o -MD -MP -MF .deps/glam2scan-glam2_heap.Tpo -c -o glam2scan-glam2_heap.o `test -f 'glam2_heap.c' || echo './'`glam2_heap.c

mv -f .deps/glam2scan-glam2_heap.Tpo .deps/glam2scan-glam2_heap.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2scan-glam2_motif.o -MD -MP -MF .deps/glam2scan-glam2_motif.Tpo -c -o glam2scan-glam2_motif.o `test -f 'glam2_motif.c' || echo './'`glam2_motif.c

mv -f .deps/glam2scan-glam2_motif.Tpo .deps/glam2scan-glam2_motif.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2scan-glam2_scan.o -MD -MP -MF .deps/glam2scan-glam2_scan.Tpo -c -o glam2scan-glam2_scan.o `test -f 'glam2_scan.c' || echo './'`glam2_scan.c

mv -f .deps/glam2scan-glam2_scan.Tpo .deps/glam2scan-glam2_scan.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2scan-glam2_scan_args.o -MD -MP -MF .deps/glam2scan-glam2_scan_args.Tpo -c -o glam2scan-glam2_scan_args.o `test -f 'glam2_scan_args.c' || echo './'`glam2_scan_args.c

mv -f .deps/glam2scan-glam2_scan_args.Tpo .deps/glam2scan-glam2_scan_args.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2scan-glam2_scan_init.o -MD -MP -MF .deps/glam2scan-glam2_scan_init.Tpo -c -o glam2scan-glam2_scan_init.o `test -f 'glam2_scan_init.c' || echo './'`glam2_scan_init.c

mv -f .deps/glam2scan-glam2_scan_init.Tpo .deps/glam2scan-glam2_scan_init.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2scan-glam2_scan_output.o -MD -MP -MF .deps/glam2scan-glam2_scan_output.Tpo -c -o glam2scan-glam2_scan_output.o `test -f 'glam2_scan_output.c' || echo './'`glam2_scan_output.c

mv -f .deps/glam2scan-glam2_scan_output.Tpo .deps/glam2scan-glam2_scan_output.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2scan-glam2_recode3_20comp.o -MD -MP -MF .deps/glam2scan-glam2_recode3_20comp.Tpo -c -o glam2scan-glam2_recode3_20comp.o `test -f 'glam2_recode3_20comp.c' || echo './'`glam2_recode3_20comp.c

mv -f .deps/glam2scan-glam2_recode3_20comp.Tpo .deps/glam2scan-glam2_recode3_20comp.Po

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT glam2scan-glam2_util.o -MD -MP -MF .deps/glam2scan-glam2_util.Tpo -c -o glam2scan-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c

mv -f .deps/glam2scan-glam2_util.Tpo .deps/glam2scan-glam2_util.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o glam2scan glam2scan-glam2_alignment.o glam2scan-glam2_alphabet.o glam2scan-glam2_dna_prior.o glam2scan-glam2_fasta.o glam2scan-glam2_dirichlet.o glam2scan-glam2_heap.o glam2scan-glam2_motif.o glam2scan-glam2_scan.o glam2scan-glam2_scan_args.o glam2scan-glam2_scan_init.o glam2scan-glam2_scan_output.o glam2scan-glam2_recode3_20comp.o glam2scan-glam2_util.o libcommon.la -lz -lm

libtool: link: gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o glam2scan glam2scan-glam2_alignment.o glam2scan-glam2_alphabet.o glam2scan-glam2_dna_prior.o glam2scan-glam2_fasta.o glam2scan-glam2_dirichlet.o glam2scan-glam2_heap.o glam2scan-glam2_motif.o glam2scan-glam2_scan.o glam2scan-glam2_scan_args.o glam2scan-glam2_scan_init.o glam2scan-glam2_scan_output.o glam2scan-glam2_recode3_20comp.o glam2scan-glam2_util.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -I../src/ -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT gomo-gomo.o -MD -MP -MF .deps/gomo-gomo.Tpo -c -o gomo-gomo.o `test -f 'gomo.c' || echo './'`gomo.c

mv -f .deps/gomo-gomo.Tpo .deps/gomo-gomo.Po

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -I../src/ -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT gomo-gomo_highlight.o -MD -MP -MF .deps/gomo-gomo_highlight.Tpo -c -o gomo-gomo_highlight.o `test -f 'gomo_highlight.c' || echo './'`gomo_highlight.c

mv -f .deps/gomo-gomo_highlight.Tpo .deps/gomo-gomo_highlight.Po

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -I../src/ -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT gomo-merger.o -MD -MP -MF .deps/gomo-merger.Tpo -c -o gomo-merger.o `test -f 'merger.c' || echo './'`merger.c

mv -f .deps/gomo-merger.Tpo .deps/gomo-merger.Po

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -I../src/ -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT gomo-ranksum_test.o -MD -MP -MF .deps/gomo-ranksum_test.Tpo -c -o gomo-ranksum_test.o `test -f 'ranksum_test.c' || echo './'`ranksum_test.c

mv -f .deps/gomo-ranksum_test.Tpo .deps/gomo-ranksum_test.Po

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -I../src/ -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT gomo-read_csv.o -MD -MP -MF .deps/gomo-read_csv.Tpo -c -o gomo-read_csv.o `test -f 'read_csv.c' || echo './'`read_csv.c

mv -f .deps/gomo-read_csv.Tpo .deps/gomo-read_csv.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -I../src/libxml2/include -I../src/ -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o gomo gomo-gomo.o gomo-gomo_highlight.o gomo-merger.o gomo-ranksum_test.o gomo-read_csv.o libcommon.la ../src/libxml2/libxml2.la ../src/libxslt/libxslt.la -lz -lm

libtool: link: gcc -I../src/libxml2/include -I../src/ -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o gomo gomo-gomo.o gomo-gomo_highlight.o gomo-merger.o gomo-ranksum_test.o gomo-read_csv.o ./.libs/libcommon.a ../src/libxml2/.libs/libxml2.a ../src/libxslt/.libs/libxslt.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT gomo_highlight-gomo_highlight.o -MD -MP -MF .deps/gomo_highlight-gomo_highlight.Tpo -c -o gomo_highlight-gomo_highlight.o `test -f 'gomo_highlight.c' || echo './'`gomo_highlight.c

mv -f .deps/gomo_highlight-gomo_highlight.Tpo .deps/gomo_highlight-gomo_highlight.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o gomo_highlight gomo_highlight-gomo_highlight.o libcommon.la -lz -lm

libtool: link: gcc -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o gomo_highlight gomo_highlight-gomo_highlight.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT import_html_template-import-html-template.o -MD -MP -MF .deps/import_html_template-import-html-template.Tpo -c -o import_html_template-import-html-template.o `test -f 'import-html-template.c' || echo './'`import-html-template.c

mv -f .deps/import_html_template-import-html-template.Tpo .deps/import_html_template-import-html-template.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o import-html-template import_html_template-import-html-template.o libcommon.la ../src/libxml2/libxml2.la -lz -lm

libtool: link: gcc -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o import-html-template import_html_template-import-html-template.o ./.libs/libcommon.a ../src/libxml2/.libs/libxml2.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT llr-llr.o -MD -MP -MF .deps/llr-llr.Tpo -c -o llr-llr.o `test -f 'llr.c' || echo './'`llr.c

mv -f .deps/llr-llr.Tpo .deps/llr-llr.Po

gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT llr-logs.o -MD -MP -MF .deps/llr-logs.Tpo -c -o llr-logs.o `test -f 'logs.c' || echo './'`logs.c

mv -f .deps/llr-logs.Tpo .deps/llr-logs.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o llr llr-llr.o llr-logs.o libcommon.la -lz -lm

libtool: link: gcc -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o llr llr-llr.o llr-logs.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT mast-diagram.o -MD -MP -MF .deps/mast-diagram.Tpo -c -o mast-diagram.o `test -f 'diagram.c' || echo './'`diagram.c

mv -f .deps/mast-diagram.Tpo .deps/mast-diagram.Po

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT mast-mast.o -MD -MP -MF .deps/mast-mast.Tpo -c -o mast-mast.o `test -f 'mast.c' || echo './'`mast.c

mv -f .deps/mast-mast.Tpo .deps/mast-mast.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o mast mast-diagram.o mast-mast.o libcommon.la ../src/libxml2/libxml2.la -lz -lm

libtool: link: gcc -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o mast mast-diagram.o mast-mast.o ./.libs/libcommon.a ../src/libxml2/.libs/libxml2.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT mcast-mcast.o -MD -MP -MF .deps/mcast-mcast.Tpo -c -o mcast-mcast.o `test -f 'mcast.c' || echo './'`mcast.c

mv -f .deps/mcast-mcast.Tpo .deps/mcast-mcast.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o mcast mcast-mcast.o libcommon.la ../src/libxml2/libxml2.la -lz -lm

libtool: link: gcc -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o mcast mcast-mcast.o ./.libs/libcommon.a ../src/libxml2/.libs/libxml2.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT meme2alph-meme2alph.o -MD -MP -MF .deps/meme2alph-meme2alph.Tpo -c -o meme2alph-meme2alph.o `test -f 'meme2alph.c' || echo './'`meme2alph.c

mv -f .deps/meme2alph-meme2alph.Tpo .deps/meme2alph-meme2alph.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o meme2alph meme2alph-meme2alph.o libcommon.la -lz -lm

libtool: link: gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o meme2alph meme2alph-meme2alph.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT meme2images-meme2images.o -MD -MP -MF .deps/meme2images-meme2images.Tpo -c -o meme2images-meme2images.o `test -f 'meme2images.c' || echo './'`meme2images.c

mv -f .deps/meme2images-meme2images.Tpo .deps/meme2images-meme2images.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o meme2images meme2images-meme2images.o libcommon.la -lz -lm

libtool: link: gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o meme2images meme2images-meme2images.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT meme2meme-meme2meme.o -MD -MP -MF .deps/meme2meme-meme2meme.Tpo -c -o meme2meme-meme2meme.o `test -f 'meme2meme.c' || echo './'`meme2meme.c

mv -f .deps/meme2meme-meme2meme.Tpo .deps/meme2meme-meme2meme.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o meme2meme meme2meme-meme2meme.o libcommon.la -lz -lm

libtool: link: gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o meme2meme meme2meme-meme2meme.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT meme_get_motif-meme-get-motif.o -MD -MP -MF .deps/meme_get_motif-meme-get-motif.Tpo -c -o meme_get_motif-meme-get-motif.o `test -f 'meme-get-motif.c' || echo './'`meme-get-motif.c

mv -f .deps/meme_get_motif-meme-get-motif.Tpo .deps/meme_get_motif-meme-get-motif.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o meme-get-motif meme_get_motif-meme-get-motif.o libcommon.la -lz -lm

libtool: link: gcc -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o meme-get-motif meme_get_motif-meme-get-motif.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT motif_shuffle_columns-motif-shuffle-columns.o -MD -MP -MF .deps/motif_shuffle_columns-motif-shuffle-columns.Tpo -c -o motif_shuffle_columns-motif-shuffle-columns.o `test -f 'motif-shuffle-columns.c' || echo './'`motif-shuffle-columns.c

mv -f .deps/motif_shuffle_columns-motif-shuffle-columns.Tpo .deps/motif_shuffle_columns-motif-shuffle-columns.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o motif-shuffle-columns motif_shuffle_columns-motif-shuffle-columns.o libcommon.la -lz -lm

libtool: link: gcc -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o motif-shuffle-columns motif_shuffle_columns-motif-shuffle-columns.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -DMOTIPH -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT motiph-motiph.o -MD -MP -MF .deps/motiph-motiph.Tpo -c -o motiph-motiph.o `test -f 'motiph.c' || echo './'`motiph.c

mv -f .deps/motiph-motiph.Tpo .deps/motiph-motiph.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -DMOTIPH -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o motiph motiph-motiph.o libcommon.la -lz -lm

libtool: link: gcc -DMOTIPH -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o motiph motiph-motiph.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -DMOTIPH -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT pmp_bf-pmp_bf.o -MD -MP -MF .deps/pmp_bf-pmp_bf.Tpo -c -o pmp_bf-pmp_bf.o `test -f 'pmp_bf.c' || echo './'`pmp_bf.c

mv -f .deps/pmp_bf-pmp_bf.Tpo .deps/pmp_bf-pmp_bf.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -DMOTIPH -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o pmp_bf pmp_bf-pmp_bf.o libcommon.la -lz -lm

libtool: link: gcc -DMOTIPH -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o pmp_bf pmp_bf-pmp_bf.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ramen-ramen.o -MD -MP -MF .deps/ramen-ramen.Tpo -c -o ramen-ramen.o `test -f 'ramen.c' || echo './'`ramen.c

mv -f .deps/ramen-ramen.Tpo .deps/ramen-ramen.Po

gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ramen-ramen_scan.o -MD -MP -MF .deps/ramen-ramen_scan.Tpo -c -o ramen-ramen_scan.o `test -f 'ramen_scan.c' || echo './'`ramen_scan.c

mv -f .deps/ramen-ramen_scan.Tpo .deps/ramen-ramen_scan.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -DMAIN -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o ramen ramen-ramen.o ramen-ramen_scan.o libcommon.la ../src/libxml2/libxml2.la -lm -lz -lm

libtool: link: gcc -DMAIN -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o ramen ramen-ramen.o ramen-ramen_scan.o ./.libs/libcommon.a ../src/libxml2/.libs/libxml2.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT spamo-cisml-sax.o -MD -MP -MF .deps/spamo-cisml-sax.Tpo -c -o spamo-cisml-sax.o `test -f 'cisml-sax.c' || echo './'`cisml-sax.c

mv -f .deps/spamo-cisml-sax.Tpo .deps/spamo-cisml-sax.Po

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT spamo-spamo.o -MD -MP -MF .deps/spamo-spamo.Tpo -c -o spamo-spamo.o `test -f 'spamo.c' || echo './'`spamo.c

mv -f .deps/spamo-spamo.Tpo .deps/spamo-spamo.Po

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT spamo-spamo-matches.o -MD -MP -MF .deps/spamo-spamo-matches.Tpo -c -o spamo-spamo-matches.o `test -f 'spamo-matches.c' || echo './'`spamo-matches.c

mv -f .deps/spamo-spamo-matches.Tpo .deps/spamo-spamo-matches.Po

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT spamo-spamo-output.o -MD -MP -MF .deps/spamo-spamo-output.Tpo -c -o spamo-spamo-output.o `test -f 'spamo-output.c' || echo './'`spamo-output.c

spamo-output.c: In function 'output_sequence_matches':

spamo-output.c:249:22: warning: '%s' directive output truncated writing 4 bytes into a region of size 1 [-Wformat-truncation=]

const char *fmt = "%s_%s_db%d_%s.%s";

In file included from /usr/include/stdio.h:862:0,

from spamo-output.h:4,

from spamo-output.c:8:

/usr/include/x86_64-linux-gnu/bits/stdio2.h:64:10: note: '__builtin___snprintf_chk' output 15 or more bytes into a destination of size 1

return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,

^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

__bos (__s), __fmt, __va_arg_pack ());

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

mv -f .deps/spamo-spamo-output.Tpo .deps/spamo-spamo-output.Po

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT spamo-spamo-scan.o -MD -MP -MF .deps/spamo-spamo-scan.Tpo -c -o spamo-spamo-scan.o `test -f 'spamo-scan.c' || echo './'`spamo-scan.c

mv -f .deps/spamo-spamo-scan.Tpo .deps/spamo-spamo-scan.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o spamo spamo-cisml-sax.o spamo-spamo.o spamo-spamo-matches.o spamo-spamo-output.o spamo-spamo-scan.o libcommon.la ../src/libxml2/libxml2.la -lz -lm

libtool: link: gcc -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o spamo spamo-cisml-sax.o spamo-spamo.o spamo-spamo-matches.o spamo-spamo-output.o spamo-spamo-scan.o ./.libs/libcommon.a ../src/libxml2/.libs/libxml2.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT tomtom-tomtom.o -MD -MP -MF .deps/tomtom-tomtom.Tpo -c -o tomtom-tomtom.o `test -f 'tomtom.c' || echo './'`tomtom.c

mv -f .deps/tomtom-tomtom.Tpo .deps/tomtom-tomtom.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -DMAIN -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o tomtom tomtom-tomtom.o libcommon.la ../src/libxml2/libxml2.la -lz -lm

libtool: link: gcc -DMAIN -I../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o tomtom tomtom-tomtom.o ./.libs/libcommon.a ../src/libxml2/.libs/libxml2.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT qvalue-qvalue.o -MD -MP -MF .deps/qvalue-qvalue.Tpo -c -o qvalue-qvalue.o `test -f 'qvalue.c' || echo './'`qvalue.c

mv -f .deps/qvalue-qvalue.Tpo .deps/qvalue-qvalue.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o qvalue qvalue-qvalue.o libcommon.la -lm -lz -lm

libtool: link: gcc -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o qvalue qvalue-qvalue.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ranksum_test-ranksum_test.o -MD -MP -MF .deps/ranksum_test-ranksum_test.Tpo -c -o ranksum_test-ranksum_test.o `test -f 'ranksum_test.c' || echo './'`ranksum_test.c

mv -f .deps/ranksum_test-ranksum_test.Tpo .deps/ranksum_test-ranksum_test.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o ranksum_test ranksum_test-ranksum_test.o libcommon.la -lm -lz -lm

libtool: link: gcc -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o ranksum_test ranksum_test-ranksum_test.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT reconcile_tree_alignment-reconcile-tree-alignment.o -MD -MP -MF .deps/reconcile_tree_alignment-reconcile-tree-alignment.Tpo -c -o reconcile_tree_alignment-reconcile-tree-alignment.o `test -f 'reconcile-tree-alignment.c' || echo './'`reconcile-tree-alignment.c

mv -f .deps/reconcile_tree_alignment-reconcile-tree-alignment.Tpo .deps/reconcile_tree_alignment-reconcile-tree-alignment.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o reconcile-tree-alignment reconcile_tree_alignment-reconcile-tree-alignment.o libcommon.la -lm -lz -lm

libtool: link: gcc -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o reconcile-tree-alignment reconcile_tree_alignment-reconcile-tree-alignment.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT reduce_alignment-reduce-alignment.o -MD -MP -MF .deps/reduce_alignment-reduce-alignment.Tpo -c -o reduce_alignment-reduce-alignment.o `test -f 'reduce-alignment.c' || echo './'`reduce-alignment.c

mv -f .deps/reduce_alignment-reduce-alignment.Tpo .deps/reduce_alignment-reduce-alignment.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o reduce-alignment reduce_alignment-reduce-alignment.o libcommon.la -lm -lz -lm

libtool: link: gcc -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o reduce-alignment reduce_alignment-reduce-alignment.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT remove_alignment_gaps-remove-alignment-gaps.o -MD -MP -MF .deps/remove_alignment_gaps-remove-alignment-gaps.Tpo -c -o remove_alignment_gaps-remove-alignment-gaps.o `test -f 'remove-alignment-gaps.c' || echo './'`remove-alignment-gaps.c

mv -f .deps/remove_alignment_gaps-remove-alignment-gaps.Tpo .deps/remove_alignment_gaps-remove-alignment-gaps.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o remove-alignment-gaps remove_alignment_gaps-remove-alignment-gaps.o libcommon.la -lm -lz -lm

libtool: link: gcc -DMAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o remove-alignment-gaps remove_alignment_gaps-remove-alignment-gaps.o ./.libs/libcommon.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I.. -I../src/libxml2/include -I../src/libexslt -I../src/ -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT xsltproc_lite-xsltproc_lite.o -MD -MP -MF .deps/xsltproc_lite-xsltproc_lite.Tpo -c -o xsltproc_lite-xsltproc_lite.o `test -f 'xsltproc_lite.c' || echo './'`xsltproc_lite.c

mv -f .deps/xsltproc_lite-xsltproc_lite.Tpo .deps/xsltproc_lite-xsltproc_lite.Po

/bin/bash ../libtool --tag=CC --mode=link gcc -I../src/libxml2/include -I../src/libexslt -I../src/ -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o xsltproc_lite xsltproc_lite-xsltproc_lite.o ../src/libxml2/libxml2.la ../src/libexslt/libexslt.la ../src/libxslt/libxslt.la -lm -lz -lm

libtool: link: gcc -I../src/libxml2/include -I../src/libexslt -I../src/ -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o xsltproc_lite xsltproc_lite-xsltproc_lite.o ../src/libxml2/.libs/libxml2.a ../src/libexslt/.libs/libexslt.a ../src/libxslt/.libs/libxslt.a -lz -lm

make[4]: Leaving directory '/meme_4.11.3/src'

Making all in parallel

make[4]: Entering directory '/meme_4.11.3/src/parallel'

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-banner.o -MD -MP -MF ../.deps/meme-banner.Tpo -c -o ../meme-banner.o `test -f '../banner.c' || echo './'`../banner.c

mv -f ../.deps/meme-banner.Tpo ../.deps/meme-banner.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-branching_search.o -MD -MP -MF ../.deps/meme-branching_search.Tpo -c -o ../meme-branching_search.o `test -f '../branching_search.c' || echo './'`../branching_search.c

mv -f ../.deps/meme-branching_search.Tpo ../.deps/meme-branching_search.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-calculate_p_y.o -MD -MP -MF ../.deps/meme-calculate_p_y.Tpo -c -o ../meme-calculate_p_y.o `test -f '../calculate_p_y.c' || echo './'`../calculate_p_y.c

mv -f ../.deps/meme-calculate_p_y.Tpo ../.deps/meme-calculate_p_y.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-discretize.o -MD -MP -MF ../.deps/meme-discretize.Tpo -c -o ../meme-discretize.o `test -f '../discretize.c' || echo './'`../discretize.c

mv -f ../.deps/meme-discretize.Tpo ../.deps/meme-discretize.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-display.o -MD -MP -MF ../.deps/meme-display.Tpo -c -o ../meme-display.o `test -f '../display.c' || echo './'`../display.c

../display.c: In function 'print_block_diagrams':

../display.c:653:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~

../display.c:653:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~~~

../display.c:656:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~

../display.c:656:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~~~

../display.c:695:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fprintf(outfile, "\n\n");

^~~

../display.c:695:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fprintf(outfile, "\n\n");

^~~~~~~

../display.c: In function 'print_sites':

../display.c:1619:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~

../display.c:1619:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~~~

../display.c:1621:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~

../display.c:1621:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~~~

../display.c: In function 'print_site_diagrams':

../display.c:2328:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i = 0; i < PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~

../display.c:2328:56: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i = 0; i < PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~~~

../display.c:2330:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i = 0; i < PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~

../display.c:2330:56: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i = 0; i < PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~~~

../display.c:2374:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i = 0; i < PAGEWIDTH; i++) fputc('-', outfile); fprintf(outfile, "\n\n");

^~~

../display.c:2374:56: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i = 0; i < PAGEWIDTH; i++) fputc('-', outfile); fprintf(outfile, "\n\n");

^~~~~~~

../display.c: In function 'align_sites':

../display.c:2408:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~

../display.c:2408:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~~~

../display.c:2411:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~

../display.c:2411:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~~~

../display.c:2480:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fprintf(outfile, "\n\n");

^~~

../display.c:2480:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fprintf(outfile, "\n\n");

^~~~~~~

../display.c: In function 'print_command_summary':

../display.c:1412:29: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]

sprintf(evt_string, "%8g", dataset->evt);

In file included from /usr/include/stdio.h:862:0,

from ../macros.h:55,

from ../hash_table.h:16,

from ../heap.h:6,

from ../meme.h:5,

from ../display.h:14,

from ../display.c:20:

/usr/include/x86_64-linux-gnu/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 9 and 14 bytes into a destination of size 12

return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,

^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

__bos (__s), __fmt, __va_arg_pack ());

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

../display.c: In function 'print_meme_file_xml':

../display.c:1832:28: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]

sprintf(evt_string, "%g", dataset->evt);

In file included from /usr/include/stdio.h:862:0,

from ../macros.h:55,

from ../hash_table.h:16,

from ../heap.h:6,

from ../meme.h:5,

from ../display.h:14,

from ../display.c:20:

/usr/include/x86_64-linux-gnu/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12

return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,

^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

__bos (__s), __fmt, __va_arg_pack ());

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

mv -f ../.deps/meme-display.Tpo ../.deps/meme-display.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-dpalign.o -MD -MP -MF ../.deps/meme-dpalign.Tpo -c -o ../meme-dpalign.o `test -f '../dpalign.c' || echo './'`../dpalign.c

mv -f ../.deps/meme-dpalign.Tpo ../.deps/meme-dpalign.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-em.o -MD -MP -MF ../.deps/meme-em.Tpo -c -o ../meme-em.o `test -f '../em.c' || echo './'`../em.c

mv -f ../.deps/meme-em.Tpo ../.deps/meme-em.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-exec_parallel.o -MD -MP -MF ../.deps/meme-exec_parallel.Tpo -c -o ../meme-exec_parallel.o `test -f '../exec_parallel.c' || echo './'`../exec_parallel.c

mv -f ../.deps/meme-exec_parallel.Tpo ../.deps/meme-exec_parallel.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-fisher_exact.o -MD -MP -MF ../.deps/meme-fisher_exact.Tpo -c -o ../meme-fisher_exact.o `test -f '../fisher_exact.c' || echo './'`../fisher_exact.c

mv -f ../.deps/meme-fisher_exact.Tpo ../.deps/meme-fisher_exact.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-init.o -MD -MP -MF ../.deps/meme-init.Tpo -c -o ../meme-init.o `test -f '../init.c' || echo './'`../init.c

mv -f ../.deps/meme-init.Tpo ../.deps/meme-init.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-justlike.o -MD -MP -MF ../.deps/meme-justlike.Tpo -c -o ../meme-justlike.o `test -f '../justlike.c' || echo './'`../justlike.c

mv -f ../.deps/meme-justlike.Tpo ../.deps/meme-justlike.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-likelihood.o -MD -MP -MF ../.deps/meme-likelihood.Tpo -c -o ../meme-likelihood.o `test -f '../likelihood.c' || echo './'`../likelihood.c

mv -f ../.deps/meme-likelihood.Tpo ../.deps/meme-likelihood.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-llr.o -MD -MP -MF ../.deps/meme-llr.Tpo -c -o ../meme-llr.o `test -f '../llr.c' || echo './'`../llr.c

mv -f ../.deps/meme-llr.Tpo ../.deps/meme-llr.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-logs.o -MD -MP -MF ../.deps/meme-logs.Tpo -c -o ../meme-logs.o `test -f '../logs.c' || echo './'`../logs.c

mv -f ../.deps/meme-logs.Tpo ../.deps/meme-logs.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-meme.o -MD -MP -MF ../.deps/meme-meme.Tpo -c -o ../meme-meme.o `test -f '../meme.c' || echo './'`../meme.c

mv -f ../.deps/meme-meme.Tpo ../.deps/meme-meme.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-meme_util.o -MD -MP -MF ../.deps/meme-meme_util.Tpo -c -o ../meme-meme_util.o `test -f '../meme_util.c' || echo './'`../meme_util.c

mv -f ../.deps/meme-meme_util.Tpo ../.deps/meme-meme_util.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-message.o -MD -MP -MF ../.deps/meme-message.Tpo -c -o ../meme-message.o `test -f '../message.c' || echo './'`../message.c

mv -f ../.deps/meme-message.Tpo ../.deps/meme-message.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-mp.o -MD -MP -MF ../.deps/meme-mp.Tpo -c -o ../meme-mp.o `test -f '../mp.c' || echo './'`../mp.c

mv -f ../.deps/meme-mp.Tpo ../.deps/meme-mp.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-oops.o -MD -MP -MF ../.deps/meme-oops.Tpo -c -o ../meme-oops.o `test -f '../oops.c' || echo './'`../oops.c

mv -f ../.deps/meme-oops.Tpo ../.deps/meme-oops.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-partition.o -MD -MP -MF ../.deps/meme-partition.Tpo -c -o ../meme-partition.o `test -f '../partition.c' || echo './'`../partition.c

mv -f ../.deps/meme-partition.Tpo ../.deps/meme-partition.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-prior.o -MD -MP -MF ../.deps/meme-prior.Tpo -c -o ../meme-prior.o `test -f '../prior.c' || echo './'`../prior.c

mv -f ../.deps/meme-prior.Tpo ../.deps/meme-prior.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-psp.o -MD -MP -MF ../.deps/meme-psp.Tpo -c -o ../meme-psp.o `test -f '../psp.c' || echo './'`../psp.c

mv -f ../.deps/meme-psp.Tpo ../.deps/meme-psp.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-read_seq_file.o -MD -MP -MF ../.deps/meme-read_seq_file.Tpo -c -o ../meme-read_seq_file.o `test -f '../read_seq_file.c' || echo './'`../read_seq_file.c

mv -f ../.deps/meme-read_seq_file.Tpo ../.deps/meme-read_seq_file.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-seed.o -MD -MP -MF ../.deps/meme-seed.Tpo -c -o ../meme-seed.o `test -f '../seed.c' || echo './'`../seed.c

mv -f ../.deps/meme-seed.Tpo ../.deps/meme-seed.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-seed_diffs.o -MD -MP -MF ../.deps/meme-seed_diffs.Tpo -c -o ../meme-seed_diffs.o `test -f '../seed_diffs.c' || echo './'`../seed_diffs.c

mv -f ../.deps/meme-seed_diffs.Tpo ../.deps/meme-seed_diffs.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-seq2theta.o -MD -MP -MF ../.deps/meme-seq2theta.Tpo -c -o ../meme-seq2theta.o `test -f '../seq2theta.c' || echo './'`../seq2theta.c

mv -f ../.deps/meme-seq2theta.Tpo ../.deps/meme-seq2theta.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-sp_matrix.o -MD -MP -MF ../.deps/meme-sp_matrix.Tpo -c -o ../meme-sp_matrix.o `test -f '../sp_matrix.c' || echo './'`../sp_matrix.c

mv -f ../.deps/meme-sp_matrix.Tpo ../.deps/meme-sp_matrix.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-starts.o -MD -MP -MF ../.deps/meme-starts.Tpo -c -o ../meme-starts.o `test -f '../starts.c' || echo './'`../starts.c

mv -f ../.deps/meme-starts.Tpo ../.deps/meme-starts.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-subseq7.o -MD -MP -MF ../.deps/meme-subseq7.Tpo -c -o ../meme-subseq7.o `test -f '../subseq7.c' || echo './'`../subseq7.c

mv -f ../.deps/meme-subseq7.Tpo ../.deps/meme-subseq7.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-tcm.o -MD -MP -MF ../.deps/meme-tcm.Tpo -c -o ../meme-tcm.o `test -f '../tcm.c' || echo './'`../tcm.c

mv -f ../.deps/meme-tcm.Tpo ../.deps/meme-tcm.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-ushuffle.o -MD -MP -MF ../.deps/meme-ushuffle.Tpo -c -o ../meme-ushuffle.o `test -f '../ushuffle.c' || echo './'`../ushuffle.c

mv -f ../.deps/meme-ushuffle.Tpo ../.deps/meme-ushuffle.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../meme-verbosity.o -MD -MP -MF ../.deps/meme-verbosity.Tpo -c -o ../meme-verbosity.o `test -f '../verbosity.c' || echo './'`../verbosity.c

mv -f ../.deps/meme-verbosity.Tpo ../.deps/meme-verbosity.Po

/bin/bash ../../libtool --tag=CC --mode=link gcc -I.. -I../../src/libxml2/include -DMPI_CMD="" -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o meme ../meme-banner.o ../meme-branching_search.o ../meme-calculate_p_y.o ../meme-discretize.o ../meme-display.o ../meme-dpalign.o ../meme-em.o ../meme-exec_parallel.o ../meme-fisher_exact.o ../meme-init.o ../meme-justlike.o ../meme-likelihood.o ../meme-llr.o ../meme-logs.o ../meme-meme.o ../meme-meme_util.o ../meme-message.o ../meme-mp.o ../meme-oops.o ../meme-partition.o ../meme-prior.o ../meme-psp.o ../meme-read_seq_file.o ../meme-seed.o ../meme-seed_diffs.o ../meme-seq2theta.o ../meme-sp_matrix.o ../meme-starts.o ../meme-subseq7.o ../meme-tcm.o ../meme-ushuffle.o ../meme-verbosity.o ../libcommon.la ../../src/libxml2/libxml2.la -lz -lm

libtool: link: gcc -I.. -I../../src/libxml2/include -DMPI_CMD= -DMEME_MAIN -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o meme ../meme-banner.o ../meme-branching_search.o ../meme-calculate_p_y.o ../meme-discretize.o ../meme-display.o ../meme-dpalign.o ../meme-em.o ../meme-exec_parallel.o ../meme-fisher_exact.o ../meme-init.o ../meme-justlike.o ../meme-likelihood.o ../meme-llr.o ../meme-logs.o ../meme-meme.o ../meme-meme_util.o ../meme-message.o ../meme-mp.o ../meme-oops.o ../meme-partition.o ../meme-prior.o ../meme-psp.o ../meme-read_seq_file.o ../meme-seed.o ../meme-seed_diffs.o ../meme-seq2theta.o ../meme-sp_matrix.o ../meme-starts.o ../meme-subseq7.o ../meme-tcm.o ../meme-ushuffle.o ../meme-verbosity.o ../.libs/libcommon.a ../../src/libxml2/.libs/libxml2.a -lz -lm

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-momo.o -MD -MP -MF ../.deps/momo-momo.Tpo -c -o ../momo-momo.o `test -f '../momo.c' || echo './'`../momo.c

mv -f ../.deps/momo-momo.Tpo ../.deps/momo-momo.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-momo-output.o -MD -MP -MF ../.deps/momo-momo-output.Tpo -c -o ../momo-momo-output.o `test -f '../momo-output.c' || echo './'`../momo-output.c

../momo-output.c: In function 'momo_print_parameters':

../momo-output.c:88:37: warning: format '%s' expects argument of type 'char *', but argument 4 has type 'void *' [-Wformat=]

fprintf(momo_file, "\tfile %d: %s\n", i+1, arraylst_get(i, phospho_filenames));

~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

../momo-output.c: In function 'momo_print_summary':

../momo-output.c:205:33: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'void *' [-Wformat=]

fprintf(momo_file, "<li>%s</li>\n", arraylst_get(k, currmotifinfo->seqs));

~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

mv -f ../.deps/momo-momo-output.Tpo ../.deps/momo-momo-output.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-momo-algorithm.o -MD -MP -MF ../.deps/momo-momo-algorithm.Tpo -c -o ../momo-momo-algorithm.o `test -f '../momo-algorithm.c' || echo './'`../momo-algorithm.c

mv -f ../.deps/momo-momo-algorithm.Tpo ../.deps/momo-momo-algorithm.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-momo-input.o -MD -MP -MF ../.deps/momo-momo-input.Tpo -c -o ../momo-momo-input.o `test -f '../momo-input.c' || echo './'`../momo-input.c

../momo-input.c: In function 'parse_PSM_header':

../momo-input.c:346:3: warning: ignoring return value of 'getline', declared with attribute warn_unused_result [-Wunused-result]

getline(header, len, fp); // read the first line, this should be the header

^~~~~~~~~~~~~~~~~~~~~~~~

mv -f ../.deps/momo-momo-input.Tpo ../.deps/momo-momo-input.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-banner.o -MD -MP -MF ../.deps/momo-banner.Tpo -c -o ../momo-banner.o `test -f '../banner.c' || echo './'`../banner.c

mv -f ../.deps/momo-banner.Tpo ../.deps/momo-banner.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-branching_search.o -MD -MP -MF ../.deps/momo-branching_search.Tpo -c -o ../momo-branching_search.o `test -f '../branching_search.c' || echo './'`../branching_search.c

mv -f ../.deps/momo-branching_search.Tpo ../.deps/momo-branching_search.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-calculate_p_y.o -MD -MP -MF ../.deps/momo-calculate_p_y.Tpo -c -o ../momo-calculate_p_y.o `test -f '../calculate_p_y.c' || echo './'`../calculate_p_y.c

mv -f ../.deps/momo-calculate_p_y.Tpo ../.deps/momo-calculate_p_y.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-discretize.o -MD -MP -MF ../.deps/momo-discretize.Tpo -c -o ../momo-discretize.o `test -f '../discretize.c' || echo './'`../discretize.c

mv -f ../.deps/momo-discretize.Tpo ../.deps/momo-discretize.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-display.o -MD -MP -MF ../.deps/momo-display.Tpo -c -o ../momo-display.o `test -f '../display.c' || echo './'`../display.c

../display.c: In function 'print_block_diagrams':

../display.c:653:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~

../display.c:653:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~~~

../display.c:656:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~

../display.c:656:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~~~

../display.c:695:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fprintf(outfile, "\n\n");

^~~

../display.c:695:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fprintf(outfile, "\n\n");

^~~~~~~

../display.c: In function 'print_sites':

../display.c:1619:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~

../display.c:1619:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~~~

../display.c:1621:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~

../display.c:1621:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~~~

../display.c: In function 'print_site_diagrams':

../display.c:2328:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i = 0; i < PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~

../display.c:2328:56: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i = 0; i < PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~~~

../display.c:2330:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i = 0; i < PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~

../display.c:2330:56: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i = 0; i < PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~~~

../display.c:2374:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i = 0; i < PAGEWIDTH; i++) fputc('-', outfile); fprintf(outfile, "\n\n");

^~~

../display.c:2374:56: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i = 0; i < PAGEWIDTH; i++) fputc('-', outfile); fprintf(outfile, "\n\n");

^~~~~~~

../display.c: In function 'align_sites':

../display.c:2408:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~

../display.c:2408:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~~~

../display.c:2411:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~

../display.c:2411:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fputc('\n', outfile);

^~~~~

../display.c:2480:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fprintf(outfile, "\n\n");

^~~

../display.c:2480:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'

for (i=0; i<PAGEWIDTH; i++) fputc('-', outfile); fprintf(outfile, "\n\n");

^~~~~~~

../display.c: In function 'print_command_summary':

../display.c:1412:29: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]

sprintf(evt_string, "%8g", dataset->evt);

In file included from /usr/include/stdio.h:862:0,

from ../macros.h:55,

from ../hash_table.h:16,

from ../heap.h:6,

from ../meme.h:5,

from ../display.h:14,

from ../display.c:20:

/usr/include/x86_64-linux-gnu/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 9 and 14 bytes into a destination of size 12

return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,

^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

__bos (__s), __fmt, __va_arg_pack ());

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

../display.c: In function 'print_meme_file_xml':

../display.c:1832:28: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]

sprintf(evt_string, "%g", dataset->evt);

In file included from /usr/include/stdio.h:862:0,

from ../macros.h:55,

from ../hash_table.h:16,

from ../heap.h:6,

from ../meme.h:5,

from ../display.h:14,

from ../display.c:20:

/usr/include/x86_64-linux-gnu/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12

return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,

^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

__bos (__s), __fmt, __va_arg_pack ());

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

mv -f ../.deps/momo-display.Tpo ../.deps/momo-display.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-dpalign.o -MD -MP -MF ../.deps/momo-dpalign.Tpo -c -o ../momo-dpalign.o `test -f '../dpalign.c' || echo './'`../dpalign.c

mv -f ../.deps/momo-dpalign.Tpo ../.deps/momo-dpalign.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-em.o -MD -MP -MF ../.deps/momo-em.Tpo -c -o ../momo-em.o `test -f '../em.c' || echo './'`../em.c

mv -f ../.deps/momo-em.Tpo ../.deps/momo-em.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-exec_parallel.o -MD -MP -MF ../.deps/momo-exec_parallel.Tpo -c -o ../momo-exec_parallel.o `test -f '../exec_parallel.c' || echo './'`../exec_parallel.c

mv -f ../.deps/momo-exec_parallel.Tpo ../.deps/momo-exec_parallel.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-fisher_exact.o -MD -MP -MF ../.deps/momo-fisher_exact.Tpo -c -o ../momo-fisher_exact.o `test -f '../fisher_exact.c' || echo './'`../fisher_exact.c

mv -f ../.deps/momo-fisher_exact.Tpo ../.deps/momo-fisher_exact.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-init.o -MD -MP -MF ../.deps/momo-init.Tpo -c -o ../momo-init.o `test -f '../init.c' || echo './'`../init.c

mv -f ../.deps/momo-init.Tpo ../.deps/momo-init.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-justlike.o -MD -MP -MF ../.deps/momo-justlike.Tpo -c -o ../momo-justlike.o `test -f '../justlike.c' || echo './'`../justlike.c

mv -f ../.deps/momo-justlike.Tpo ../.deps/momo-justlike.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-likelihood.o -MD -MP -MF ../.deps/momo-likelihood.Tpo -c -o ../momo-likelihood.o `test -f '../likelihood.c' || echo './'`../likelihood.c

mv -f ../.deps/momo-likelihood.Tpo ../.deps/momo-likelihood.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-llr.o -MD -MP -MF ../.deps/momo-llr.Tpo -c -o ../momo-llr.o `test -f '../llr.c' || echo './'`../llr.c

mv -f ../.deps/momo-llr.Tpo ../.deps/momo-llr.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-logs.o -MD -MP -MF ../.deps/momo-logs.Tpo -c -o ../momo-logs.o `test -f '../logs.c' || echo './'`../logs.c

mv -f ../.deps/momo-logs.Tpo ../.deps/momo-logs.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-meme.o -MD -MP -MF ../.deps/momo-meme.Tpo -c -o ../momo-meme.o `test -f '../meme.c' || echo './'`../meme.c

mv -f ../.deps/momo-meme.Tpo ../.deps/momo-meme.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-meme_util.o -MD -MP -MF ../.deps/momo-meme_util.Tpo -c -o ../momo-meme_util.o `test -f '../meme_util.c' || echo './'`../meme_util.c

mv -f ../.deps/momo-meme_util.Tpo ../.deps/momo-meme_util.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-message.o -MD -MP -MF ../.deps/momo-message.Tpo -c -o ../momo-message.o `test -f '../message.c' || echo './'`../message.c

mv -f ../.deps/momo-message.Tpo ../.deps/momo-message.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-mp.o -MD -MP -MF ../.deps/momo-mp.Tpo -c -o ../momo-mp.o `test -f '../mp.c' || echo './'`../mp.c

mv -f ../.deps/momo-mp.Tpo ../.deps/momo-mp.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-oops.o -MD -MP -MF ../.deps/momo-oops.Tpo -c -o ../momo-oops.o `test -f '../oops.c' || echo './'`../oops.c

mv -f ../.deps/momo-oops.Tpo ../.deps/momo-oops.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-partition.o -MD -MP -MF ../.deps/momo-partition.Tpo -c -o ../momo-partition.o `test -f '../partition.c' || echo './'`../partition.c

mv -f ../.deps/momo-partition.Tpo ../.deps/momo-partition.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-prior.o -MD -MP -MF ../.deps/momo-prior.Tpo -c -o ../momo-prior.o `test -f '../prior.c' || echo './'`../prior.c

mv -f ../.deps/momo-prior.Tpo ../.deps/momo-prior.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-psp.o -MD -MP -MF ../.deps/momo-psp.Tpo -c -o ../momo-psp.o `test -f '../psp.c' || echo './'`../psp.c

mv -f ../.deps/momo-psp.Tpo ../.deps/momo-psp.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-read_seq_file.o -MD -MP -MF ../.deps/momo-read_seq_file.Tpo -c -o ../momo-read_seq_file.o `test -f '../read_seq_file.c' || echo './'`../read_seq_file.c

mv -f ../.deps/momo-read_seq_file.Tpo ../.deps/momo-read_seq_file.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-seed.o -MD -MP -MF ../.deps/momo-seed.Tpo -c -o ../momo-seed.o `test -f '../seed.c' || echo './'`../seed.c

mv -f ../.deps/momo-seed.Tpo ../.deps/momo-seed.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-seed_diffs.o -MD -MP -MF ../.deps/momo-seed_diffs.Tpo -c -o ../momo-seed_diffs.o `test -f '../seed_diffs.c' || echo './'`../seed_diffs.c

mv -f ../.deps/momo-seed_diffs.Tpo ../.deps/momo-seed_diffs.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-seq2theta.o -MD -MP -MF ../.deps/momo-seq2theta.Tpo -c -o ../momo-seq2theta.o `test -f '../seq2theta.c' || echo './'`../seq2theta.c

mv -f ../.deps/momo-seq2theta.Tpo ../.deps/momo-seq2theta.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-sp_matrix.o -MD -MP -MF ../.deps/momo-sp_matrix.Tpo -c -o ../momo-sp_matrix.o `test -f '../sp_matrix.c' || echo './'`../sp_matrix.c

mv -f ../.deps/momo-sp_matrix.Tpo ../.deps/momo-sp_matrix.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-starts.o -MD -MP -MF ../.deps/momo-starts.Tpo -c -o ../momo-starts.o `test -f '../starts.c' || echo './'`../starts.c

mv -f ../.deps/momo-starts.Tpo ../.deps/momo-starts.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-subseq7.o -MD -MP -MF ../.deps/momo-subseq7.Tpo -c -o ../momo-subseq7.o `test -f '../subseq7.c' || echo './'`../subseq7.c

mv -f ../.deps/momo-subseq7.Tpo ../.deps/momo-subseq7.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-tcm.o -MD -MP -MF ../.deps/momo-tcm.Tpo -c -o ../momo-tcm.o `test -f '../tcm.c' || echo './'`../tcm.c

mv -f ../.deps/momo-tcm.Tpo ../.deps/momo-tcm.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-ushuffle.o -MD -MP -MF ../.deps/momo-ushuffle.Tpo -c -o ../momo-ushuffle.o `test -f '../ushuffle.c' || echo './'`../ushuffle.c

mv -f ../.deps/momo-ushuffle.Tpo ../.deps/momo-ushuffle.Po

gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -MT ../momo-verbosity.o -MD -MP -MF ../.deps/momo-verbosity.Tpo -c -o ../momo-verbosity.o `test -f '../verbosity.c' || echo './'`../verbosity.c

mv -f ../.deps/momo-verbosity.Tpo ../.deps/momo-verbosity.Po

/bin/bash ../../libtool --tag=CC --mode=link gcc -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o momo ../momo-momo.o ../momo-momo-output.o ../momo-momo-algorithm.o ../momo-momo-input.o ../momo-banner.o ../momo-branching_search.o ../momo-calculate_p_y.o ../momo-discretize.o ../momo-display.o ../momo-dpalign.o ../momo-em.o ../momo-exec_parallel.o ../momo-fisher_exact.o ../momo-init.o ../momo-justlike.o ../momo-likelihood.o ../momo-llr.o ../momo-logs.o ../momo-meme.o ../momo-meme_util.o ../momo-message.o ../momo-mp.o ../momo-oops.o ../momo-partition.o ../momo-prior.o ../momo-psp.o ../momo-read_seq_file.o ../momo-seed.o ../momo-seed_diffs.o ../momo-seq2theta.o ../momo-sp_matrix.o ../momo-starts.o ../momo-subseq7.o ../momo-tcm.o ../momo-ushuffle.o ../momo-verbosity.o ../libcommon.la ../../src/libxml2/libxml2.la -lz -lm

libtool: link: gcc -I../../src/libxml2/include -std=gnu89 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o momo ../momo-momo.o ../momo-momo-output.o ../momo-momo-algorithm.o ../momo-momo-input.o ../momo-banner.o ../momo-branching_search.o ../momo-calculate_p_y.o ../momo-discretize.o ../momo-display.o ../momo-dpalign.o ../momo-em.o ../momo-exec_parallel.o ../momo-fisher_exact.o ../momo-init.o ../momo-justlike.o ../momo-likelihood.o ../momo-llr.o ../momo-logs.o ../momo-meme.o ../momo-meme_util.o ../momo-message.o ../momo-mp.o ../momo-oops.o ../momo-partition.o ../momo-prior.o ../momo-psp.o ../momo-read_seq_file.o ../momo-seed.o ../momo-seed_diffs.o ../momo-seq2theta.o ../momo-sp_matrix.o ../momo-starts.o ../momo-subseq7.o ../momo-tcm.o ../momo-ushuffle.o ../momo-verbosity.o ../.libs/libcommon.a ../../src/libxml2/.libs/libxml2.a -lz -lm

make[4]: Leaving directory '/meme_4.11.3/src/parallel'

make[3]: Leaving directory '/meme_4.11.3/src'

make[2]: Leaving directory '/meme_4.11.3/src'

Making all in scripts

make[2]: Entering directory '/meme_4.11.3/scripts'

/bin/sed -e 's%@ARCHIVE_REVISION@%c13e15f35e38483381a6e8a363f9137e303c0765%' -e 's%@ARCHIVE_DATE@%Sat Mar 11 20:16:08 2017 -0800%' -e 's%@ARCHIVE_VERSION@%4.11.3%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%/usr/bin/python3%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/root/meme/lib/perl%' -e 's%@PYTHONLIBDIR@%/root/meme/lib/python%' -e 's%@JAVALIBDIR@%/root/meme/lib/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/root/meme/etc%' -e 's%@BINDIR@%/root/meme/bin%' -e 's%@MEMELOGS@%/root/meme/LOGS%' -e 's%@MEMEDB@%/root/meme/db%' -e 's%@SITE_URL@%http://meme-suite.org%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/root/meme/doc/%' ama-qvalues.pl.in > ama-qvalues; \

chmod +x ama-qvalues

chmod +x beeml2meme

chmod +x dreme_xml_to_html

chmod +x dreme_xml_to_txt

chmod +x elm2meme

chmod +x fasta-center

chmod +x fasta-dinucleotide-shuffle

chmod +x fasta-fetch

chmod +x fasta-hamming-enrich

chmod +x fasta-make-index

chmod +x fasta-most

chmod +x fasta-re-match

chmod +x fasta-subsample

chmod +x fasta-unique-names

chmod +x glam2html

chmod +x glam2psfm

chmod +x glam2scan2html

chmod +x chen2meme

chmod +x jaspar2meme

chmod +x hart2meme-bkg

chmod +x hartemink2psp

chmod +x iupac2meme

chmod +x mast_xml_to_html

chmod +x mast_xml_to_txt

chmod +x matrix2meme

chmod +x meme-chip

chmod +x meme-rename

chmod +x meme_xml_to_html

chmod +x nmica2meme

chmod +x priority2meme

chmod +x psp-gen

chmod +x rsat-retrieve-seq

chmod +x rsat-supported-organisms

chmod +x rna2meme

chmod +x scpd2meme

chmod +x sites2meme

chmod +x taipale2meme

chmod +x tamo2meme

chmod +x tomtom_xml_to_html

chmod +x transfac2meme

chmod +x uniprobe2meme

chmod +x dreme

chmod +x dreme-py3

chmod +x fasta-dinucleotide-shuffle-py3

chmod +x fasta-hamming-enrich-py3

cp fasta-dinucleotide-shuffle fasta-dinucleotide-shuffle.py

cp fasta-hamming-enrich fasta-hamming-enrich.py

echo fasta-dinucleotide-shuffle.py fasta-hamming-enrich.py

fasta-dinucleotide-shuffle.py fasta-hamming-enrich.py

echo alphabet.py hypergeometric.py sequence.py

alphabet.py hypergeometric.py sequence.py

cp fasta-dinucleotide-shuffle-py3 fasta-dinucleotide-shuffle-py3.py

cp fasta-hamming-enrich-py3 fasta-hamming-enrich-py3.py

make[2]: Leaving directory '/meme_4.11.3/scripts'

Making all in tests

make[2]: Entering directory '/meme_4.11.3/tests'

Making all in ame

make[3]: Entering directory '/meme_4.11.3/tests/ame'

make[3]: Nothing to be done for 'all'.

make[3]: Leaving directory '/meme_4.11.3/tests/ame'

Making all in clustalw2fasta

make[3]: Entering directory '/meme_4.11.3/tests/clustalw2fasta'

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make[3]: Leaving directory '/meme_4.11.3/tests/clustalw2fasta'

Making all in centrimo

make[3]: Entering directory '/meme_4.11.3/tests/centrimo'

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make[3]: Leaving directory '/meme_4.11.3/tests/centrimo'

Making all in common

make[3]: Entering directory '/meme_4.11.3/tests/common'

Making all in motif.crp0

make[4]: Entering directory '/meme_4.11.3/tests/common/motif.crp0'

make[4]: Nothing to be done for 'all'.

make[4]: Leaving directory '/meme_4.11.3/tests/common/motif.crp0'

Making all in motif.Puf3p

make[4]: Entering directory '/meme_4.11.3/tests/common/motif.Puf3p'

make[4]: Nothing to be done for 'all'.

make[4]: Leaving directory '/meme_4.11.3/tests/common/motif.Puf3p'

make[4]: Entering directory '/meme_4.11.3/tests/common'

make[4]: Nothing to be done for 'all-am'.

make[4]: Leaving directory '/meme_4.11.3/tests/common'

make[3]: Leaving directory '/meme_4.11.3/tests/common'

Making all in create-priors

make[3]: Entering directory '/meme_4.11.3/tests/create-priors'

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make[3]: Leaving directory '/meme_4.11.3/tests/create-priors'

Making all in draw-mhmm

make[3]: Entering directory '/meme_4.11.3/tests/draw-mhmm'

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make[3]: Leaving directory '/meme_4.11.3/tests/draw-mhmm'

Making all in dreme

make[3]: Entering directory '/meme_4.11.3/tests/dreme'

make[3]: Nothing to be done for 'all'.

make[3]: Leaving directory '/meme_4.11.3/tests/dreme'

Making all in fasta-center

make[3]: Entering directory '/meme_4.11.3/tests/fasta-center'

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make[3]: Leaving directory '/meme_4.11.3/tests/fasta-center'

Making all in fimo

make[3]: Entering directory '/meme_4.11.3/tests/fimo'

make[3]: Nothing to be done for 'all'.

make[3]: Leaving directory '/meme_4.11.3/tests/fimo'

Making all in glam2

make[3]: Entering directory '/meme_4.11.3/tests/glam2'

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make[3]: Leaving directory '/meme_4.11.3/tests/glam2'

Making all in glam2scan

make[3]: Entering directory '/meme_4.11.3/tests/glam2scan'

make[3]: Nothing to be done for 'all'.

make[3]: Leaving directory '/meme_4.11.3/tests/glam2scan'

Making all in gomo

make[3]: Entering directory '/meme_4.11.3/tests/gomo'

make[3]: Nothing to be done for 'all'.

make[3]: Leaving directory '/meme_4.11.3/tests/gomo'

Making all in mast

make[3]: Entering directory '/meme_4.11.3/tests/mast'

make[3]: Nothing to be done for 'all'.

make[3]: Leaving directory '/meme_4.11.3/tests/mast'

Making all in mcast

make[3]: Entering directory '/meme_4.11.3/tests/mcast'

make[3]: Nothing to be done for 'all'.

make[3]: Leaving directory '/meme_4.11.3/tests/mcast'

Making all in meme

make[3]: Entering directory '/meme_4.11.3/tests/meme'

make[3]: Nothing to be done for 'all'.

make[3]: Leaving directory '/meme_4.11.3/tests/meme'

Making all in mhmm

make[3]: Entering directory '/meme_4.11.3/tests/mhmm'

make[3]: Nothing to be done for 'all'.

make[3]: Leaving directory '/meme_4.11.3/tests/mhmm'

Making all in mhmms

make[3]: Entering directory '/meme_4.11.3/tests/mhmms'

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make[3]: Leaving directory '/meme_4.11.3/tests/mhmms'

Making all in mhmmscan

make[3]: Entering directory '/meme_4.11.3/tests/mhmmscan'

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make[3]: Leaving directory '/meme_4.11.3/tests/mhmmscan'

Making all in motiph

make[3]: Entering directory '/meme_4.11.3/tests/motiph'

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make[3]: Leaving directory '/meme_4.11.3/tests/motiph'

Making all in psp-gen

make[3]: Entering directory '/meme_4.11.3/tests/psp-gen'

make[3]: Nothing to be done for 'all'.

make[3]: Leaving directory '/meme_4.11.3/tests/psp-gen'

Making all in qvalue

make[3]: Entering directory '/meme_4.11.3/tests/qvalue'

make[3]: Nothing to be done for 'all'.

make[3]: Leaving directory '/meme_4.11.3/tests/qvalue'

Making all in scaffold

make[3]: Entering directory '/meme_4.11.3/tests/scaffold'

make[3]: Nothing to be done for 'all'.

make[3]: Leaving directory '/meme_4.11.3/tests/scaffold'

Making all in spamo

make[3]: Entering directory '/meme_4.11.3/tests/spamo'

make[3]: Nothing to be done for 'all'.

make[3]: Leaving directory '/meme_4.11.3/tests/spamo'

Making all in tomtom

make[3]: Entering directory '/meme_4.11.3/tests/tomtom'

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make[3]: Leaving directory '/meme_4.11.3/tests/tomtom'

Making all in web

make[3]: Entering directory '/meme_4.11.3/tests/web'

make[3]: Nothing to be done for 'all'.

make[3]: Leaving directory '/meme_4.11.3/tests/web'

Making all in scripts

make[3]: Entering directory '/meme_4.11.3/tests/scripts'

make[3]: Nothing to be done for 'all'.

make[3]: Leaving directory '/meme_4.11.3/tests/scripts'

make[3]: Entering directory '/meme_4.11.3/tests'

make[3]: Nothing to be done for 'all-am'.

make[3]: Leaving directory '/meme_4.11.3/tests'

make[2]: Leaving directory '/meme_4.11.3/tests'

Making all in doc

make[2]: Entering directory '/meme_4.11.3/doc'

/bin/sed -e "/INSERT_COPYING_FILE/r ../COPYING" -e "/INSERT_COPYING_FILE/d" copyright.html.in > copyright.html

make all-recursive

make[3]: Entering directory '/meme_4.11.3/doc'

Making all in examples

make[4]: Entering directory '/meme_4.11.3/doc/examples'

Making all in compute_prior_dist_example_output_files

make[5]: Entering directory '/meme_4.11.3/doc/examples/compute_prior_dist_example_output_files'

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make[5]: Leaving directory '/meme_4.11.3/doc/examples/compute_prior_dist_example_output_files'

Making all in sample_opal_scripts

make[5]: Entering directory '/meme_4.11.3/doc/examples/sample_opal_scripts'

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make[5]: Leaving directory '/meme_4.11.3/doc/examples/sample_opal_scripts'

make[5]: Entering directory '/meme_4.11.3/doc/examples'

make[5]: Nothing to be done for 'all-am'.

make[5]: Leaving directory '/meme_4.11.3/doc/examples'

make[4]: Leaving directory '/meme_4.11.3/doc/examples'

Making all in images

make[4]: Entering directory '/meme_4.11.3/doc/images'

make[4]: Nothing to be done for 'all'.

make[4]: Leaving directory '/meme_4.11.3/doc/images'

Making all in css

make[4]: Entering directory '/meme_4.11.3/doc/css'

make[4]: Nothing to be done for 'all'.

make[4]: Leaving directory '/meme_4.11.3/doc/css'

Making all in js

make[4]: Entering directory '/meme_4.11.3/doc/js'

/bin/sed -e 's%\@VERSION\@%4.11.3%g' -e 's%\@CONTACT\@%%g' -e 's%\@DEV_CONTACT\@%meme-...@uw.edu%g' -e 's%\@URL\@%http://meme-suite.org%g' -e 's%\@PREV_URL\@%%g' -e 's%\@PREV_VER\@%%g' -e 's%\@NOTICES_URL\@%./notices.txt%g' -e 's%\@NEWS_URL\@%./news.txt%g' menu-configure.js.in > menu-configure.js

make all-am

make[5]: Entering directory '/meme_4.11.3/doc/js'

make[5]: Nothing to be done for 'all-am'.

make[5]: Leaving directory '/meme_4.11.3/doc/js'

make[4]: Leaving directory '/meme_4.11.3/doc/js'

make[4]: Entering directory '/meme_4.11.3/doc'

make[4]: Nothing to be done for 'all-am'.

make[4]: Leaving directory '/meme_4.11.3/doc'

make[3]: Leaving directory '/meme_4.11.3/doc'

make[2]: Leaving directory '/meme_4.11.3/doc'

Making all in etc

make[2]: Entering directory '/meme_4.11.3/etc'

/bin/sed -e 's%@SITE_URL@%http://meme-suite.org%' -e 's%@AMIGO_URL@%http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO_TERM_ID%' constants.js.in > constants.js

/bin/sed -e 's%@SITE_URL@%http://meme-suite.org%' -e 's%@AMIGO_URL@%http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO_TERM_ID%' constants.xsl.in > constants.xsl

/usr/bin/perl generate_xsl_icons.pl ../doc/images/gomo_icon.png > icons.xsl

/bin/sed -e 's%@SITE_URL@%http://meme-suite.org%' -e 's%@AMIGO_URL@%http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO_TERM_ID%' logging.conf.in > logging.conf

/bin/sed 's/tname/meme.css/' xsl-wrapper.in | /bin/sed '5r meme.css' > meme.css.xsl

/usr/bin/perl generate_js_wrapped_template.pl motif_logo_template template.eps > motif_logo_template.js

/bin/sed 's/tname/utilities.js/' xsl-wrapper.in | /bin/sed '5r utilities.js' > utilities.js.xsl

make[2]: Leaving directory '/meme_4.11.3/etc'

make[2]: Entering directory '/meme_4.11.3'

make[2]: Leaving directory '/meme_4.11.3'

make[1]: Leaving directory '/meme_4.11.3'

cd tests/scripts; make check

make[1]: Entering directory '/meme_4.11.3/tests/scripts'

make test_driver

make[2]: Entering directory '/meme_4.11.3/tests/scripts'

/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' test_driver.pl.in > test_driver

chmod +x test_driver

make[2]: Leaving directory '/meme_4.11.3/tests/scripts'

make check-TESTS

make[2]: Entering directory '/meme_4.11.3/tests/scripts'

make[3]: Entering directory '/meme_4.11.3/tests/scripts'

PASS: ama1

PASS: ama2

PASS: ame1

PASS: centrimo1

PASS: create-priors1

PASS: create-priors2

ERROR: /meme_4.11.3/tests/scripts/dreme.test (FAULT IN TEST!)

PASS: fasta-center1

PASS: fasta-dinucleotide-shuffle1

PASS: fimo1

PASS: fimo2

PASS: fimo3

PASS: fimo4

PASS: glam2_1

PASS: glam2scan1

PASS: gomo1

PASS: gomo2

PASS: mast1

PASS: mast2

PASS: mast3

PASS: mast4

PASS: mast5

PASS: mast6

PASS: mast7

PASS: mast8

PASS: mast9

PASS: mast10

PASS: mast11

PASS: mast12

PASS: mast13

PASS: mast14

PASS: mast15

PASS: mast16

PASS: mast17

PASS: mast18

PASS: mcast1

PASS: meme1

PASS: meme2

PASS: meme3

PASS: meme4

PASS: meme5

PASS: meme6

PASS: meme_psp

PASS: motif-in.meme.crp0.text

PASS: motif-in.meme.crp0.xml

PASS: motif-in.meme.crp0.html

PASS: motif-in.meme.lipocalin.text

PASS: motif-in.meme.lipocalin.xml

PASS: motif-in.meme.lipocalin.html

PASS: motif-in.meme.puf3p.text

PASS: motif-in.meme.puf3p.xml

PASS: motif-in.meme.puf3p.html

PASS: motif-in.meme.crp0.extdna.text

PASS: motif-in.meme.crp0.extdna.xml

PASS: motif-in.meme.crp0.extdna.html

PASS: motif-in.dreme.klf1.text

PASS: motif-in.dreme.klf1.xml

PASS: motif-in.dreme.klf1.html

PASS: motif-in.dreme.klf1.extdna.text

PASS: motif-in.dreme.klf1.extdna.xml

PASS: motif-in.dreme.klf1.extdna.html

PASS: motif-in.dreme.puf3p.text

PASS: motif-in.dreme.puf3p.xml

PASS: motif-in.dreme.puf3p.html

PASS: motiph1

PASS: motiph2

PASS: psp-gen1

PASS: psp-gen2

PASS: psp-gen3

PASS: qvalue1

PASS: spamo1

PASS: spamo2

PASS: tomtom_allr

PASS: tomtom_ed

PASS: tomtom_kullback

PASS: tomtom_pearson

PASS: tomtom_sandelin

PASS: tomtom_blic1

PASS: tomtom_blic5

PASS: tomtom_allr_cs

PASS: tomtom_ed_cs

PASS: tomtom_kullback_cs

PASS: tomtom_pearson_cs

PASS: tomtom_sandelin_cs

PASS: tomtom_blic1_cs

PASS: tomtom_blic5_cs

============================================================================

Testsuite summary for meme 4.11.3

============================================================================

# TOTAL: 86

# PASS: 85

# SKIP: 0

# XFAIL: 0

# FAIL: 0

# XPASS: 0

# ERROR: 1

============================================================================

See tests/scripts/test-suite.log

============================================================================

Makefile:572: recipe for target 'test-suite.log' failed

make[3]: Leaving directory '/meme_4.11.3/tests/scripts'

make[3]: *** [test-suite.log] Error 1

Makefile:678: recipe for target 'check-TESTS' failed

make[2]: Leaving directory '/meme_4.11.3/tests/scripts'

make[2]: *** [check-TESTS] Error 2

Makefile:744: recipe for target 'check-am' failed

make[1]: *** [check-am] Error 2

make[1]: Leaving directory '/meme_4.11.3/tests/scripts'

Makefile:1185: recipe for target 'test' failed

make: *** [test] Error 2

make install-recursive

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