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HELLO!! I have a problem to run FIMO by command line. I use as input a motif file obtain from jaspar2meme conversion utilities, and always have this error:
Errors from MEME text parser: The background frequencies were ordered �� � but for DNA they must be ordered ACGT to ensure consistancy with the motif matricies. The frequencies do not sum to 1. FATAL: No motifs could be read.
Any help please???
Thanks! Agus
CharlesEGrant
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Jan 25, 2017, 4:14:43 PM1/25/17
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It looks like there is something wrong with the motif file you are trying to use. If you could forward us a copy of it, and the command line you used to generate it, that would help us troubleshoot the problem.
Agustina Pascual
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Jan 30, 2017, 9:15:58 AM1/30/17
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Thanks!!! I could i could troubleshoot the problem... Was a mistake in the motifs file.