Getting background from p-value and score

[Bharata Kalbuaji]

So, I remove my background frequency for FIMO. Is there any way to know the background I use from the FIMO result? I have the FIMO result that has p-value and score. I use text mode and no q-value so the p-value is still raw.

[CharlesEGrant]

The background frequencies used are recorded in the FIMO XML and HTML output, but not in the plain text or GFF formats. There is no way to re-create the background from the scores and p-values.