read_impute_bgen2.cpp:100: error: no matching function for call to ‘BgenParserGenotypeReadHelper::get_sample_ids(BgenParserGenotypeReadHelper::genotyp

[Shicheng Guo]

make[2]: Entering directory `/mnt/bigdata/Genetic/Projects/shg047/tools/mega2_v5.0.0_src/srcdir/lib/bcftools-1.6'

make[2]: Nothing to be done for `lib-static'.

make[2]: Leaving directory `/mnt/bigdata/Genetic/Projects/shg047/tools/mega2_v5.0.0_src/srcdir/lib/bcftools-1.6'

make[1]: Leaving directory `/mnt/bigdata/Genetic/Projects/shg047/tools/mega2_v5.0.0_src/srcdir/lib/bcftools-1.6'

rm -f read_impute_bgen2.o

g++ -Wall -O3   -c -D_mega2_ -I. -Ibgen/genfile/include -Ibgen/zstd-1.1.0/lib -std=c++0x read_impute_bgen2.cpp

read_impute_bgen2.cpp: In member function ‘virtual void BgenParserGenotypeReadHelper::genotypes_init()’:

read_impute_bgen2.cpp:100: error: no matching function for call to ‘BgenParserGenotypeReadHelper::get_sample_ids(BgenParserGenotypeReadHelper::genotypes_init()::noop&)’

make: *** [read_impute_bgen2.o] Error 1

make program exit value 2

ERROR: Compilation of mega2 failed.  Get help

[MFLDCLIN\guosa@birc7-lc mega2_v5.0.0_src]$ gcc --version

gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)

Copyright (C) 2010 Free Software Foundation, Inc.

This is free software; see the source for copying conditions.  There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)

Not working

[Shicheng Guo]

Solved!!

scl enable devtoolset-2 bash

gcc (GCC) 4.8.2 20140120 (Red Hat 4.8.2-15)

After update GCC to 4.8.2 for RedHat, Installing is smoothly. 

Shicheng

[Dan Weeks]

Thank you for sharing your solution.

Dan