Hi, I am using mega2 for getting the structure format files from ped, however I got several errors including: "WARNING: The program 'mega2log2html.pl' may not be installed on your system." I already run ./installl.sh What are the suggestions to solve this problem?
Thanks!!
default [MARKERS]
After selecting traits and covariates
1 trait locus
1 Affection status locus:
default
Done checking locus integrity.
Checking pedigree integrity...
ERROR: Pedigree Sample1: member 1 has unknown sex (0)
ERROR: Pedigree Sample2: member 1 has unknown sex (0)
ERROR: Pedigree Sample3: member 1 has unknown sex (0)
ERROR: Pedigree Sample4: member 1 has unknown sex (0)
ERROR: Pedigree Sample5: member 1 has unknown sex (0)
ERROR: Pedigree Sample6: member 1 has unknown sex (0)
ERROR: Pedigree Sample7: member 1 has unknown sex (0)
ERROR: Pedigree Sample8: member 1 has unknown sex (0)
ERROR: Pedigree Sample9: member 1 has unknown sex (0)
ERROR: Pedigree Sample10: member 1 has unknown sex (0)
ERROR: Pedigree Sample11: member 1 has unknown sex (0)
ERROR: Pedigree Sample12: member 1 has unknown sex (0)
Done checking pedigree integrity.
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
Fatal errors in pedigree file PLINK11junomis30depth25qual.ped.
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
===========================================================
Run parameters stored in batch file 2015-7-01-15-11/MEGA2.BATCH
See run summaries in directory 2015-7-01-15-11
MEGA2.LOG, MEGA2.RECODE, MEGA2.ERR
sh: mega2log2html.pl: command not found
WARNING: Execution of the shell failed for 'mega2log2html.pl'.
WARNING: No 'MEGA2*.html' files will have been created.
WARNING: Unable to create html-formatted run summary.
WARNING: The program 'mega2log2html.pl' may not be installed on your system.
WARNING: Run 'install.sh scripts' to install it.
===========================================================
input_check.cpp:612 Mega2 terminated. Error "DATA_INCONSISTENCY" (#6).
ERROR: Pedigree Sample1: member 1 has unknown sex (0)
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