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Welcome to the medi-users mailing list
This is the place for announcements and questions on the
MEDI toolbox for quantitative susceptibility mapping
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Pascal Spincemaille
1/15/20
Toolbox update 1/15/2020
Dear MEDI users, An updated version of the MEDI toolbox is now available for download. Updates for
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Toolbox update 1/15/2020
Dear MEDI users, An updated version of the MEDI toolbox is now available for download. Updates for
1/15/20
Matthew Hoch
Aug 19
B0 Direction
Hi All, I am inputing my parameters manually, and I am struggling to determine if the B0 direction
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B0 Direction
Hi All, I am inputing my parameters manually, and I am struggling to determine if the B0 direction
Aug 19
Matthew Hoch
,
Alexey Dimov
2
May 7
Unwrapping Function
Hi Matt, It is advised to use unwrapPhase, as Laplacian unwrapping Laplacian unwrapping produces only
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Unwrapping Function
Hi Matt, It is advised to use unwrapPhase, as Laplacian unwrapping Laplacian unwrapping produces only
May 7
Nick Streicher
11/24/24
set up
can anyone assist me with setup?
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set up
can anyone assist me with setup?
11/24/24
Jacob Degitz
10/16/24
Problem with Graph-Cuts & SPURS
Hello everyone, I have noticed an inconsistency in the use of the "base_xy" variable across
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Problem with Graph-Cuts & SPURS
Hello everyone, I have noticed an inconsistency in the use of the "base_xy" variable across
10/16/24
Alpay Özcan
2
8/11/24
on obtaining phase image from rescaled DICOM file
Following up on the thread, when mapped to [-4096/4095 4094/4095] * pi = [-1.0002 0.9998] * pi the
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on obtaining phase image from rescaled DICOM file
Following up on the thread, when mapped to [-4096/4095 4094/4095] * pi = [-1.0002 0.9998] * pi the
8/11/24
Humberto M.
, …
Alpay Özcan
7
8/6/24
Mex file error
Hello, In regard to the cause of the bug, the attribute 'EchoNumber' should be '
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Mex file error
Hello, In regard to the cause of the bug, the attribute 'EchoNumber' should be '
8/6/24
Matthew Hoch
4/26/24
Numerical Phantom Questions
Hello All, I have been using the numerical phantom code, and I have a few questions. 1. What is the
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Numerical Phantom Questions
Hello All, I have been using the numerical phantom code, and I have a few questions. 1. What is the
4/26/24
Matthew Hoch
,
spince...@gmail.com
5
4/16/24
Laplacian Unwrapping Issue
That worked! Thank you very much! On Tuesday, April 16, 2024 at 2:19:07 PM UTC-4 spince...@gmail.com
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Laplacian Unwrapping Issue
That worked! Thank you very much! On Tuesday, April 16, 2024 at 2:19:07 PM UTC-4 spince...@gmail.com
4/16/24
Matthew Hoch
3/26/24
Other Background Removal Techniques
Hello Everyone! Has anyone tried other background removal techniques other than LBV and PDF?
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Other Background Removal Techniques
Hello Everyone! Has anyone tried other background removal techniques other than LBV and PDF?
3/26/24
Bram Callewaert
, …
spince...@gmail.com
3
2/29/24
Extraction brain mask: multiple definition of () First defined here
Dear Aurélien Look up the definitions of value_string, set_value, print, and config_key in
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Extraction brain mask: multiple definition of () First defined here
Dear Aurélien Look up the definitions of value_string, set_value, print, and config_key in
2/29/24
Matthew Hoch
2/26/24
Fit_ppt_Complex and Unwrapping
Hello! I am new to this toolbox, and I just want to verify that I understand the function outputs.
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Fit_ppt_Complex and Unwrapping
Hello! I am new to this toolbox, and I just want to verify that I understand the function outputs.
2/26/24
Fayez H.
,
Alexey Dimov
4
1/25/24
QSM Artifacts
Hi, just pinging this again. Thanks! Fayez On Friday 19 January 2024 at 15:13:41 UTC-8 Fayez H. wrote
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QSM Artifacts
Hi, just pinging this again. Thanks! Fayez On Friday 19 January 2024 at 15:13:41 UTC-8 Fayez H. wrote
1/25/24
Byumri Rf
, …
Tomas Muñoz Santoro
5
6/6/23
Read_DICOM failing on Example Siemens Data, MATLAB 2021b
Hello Medi Group! The problem can be solved changing the code accordingly as spince said. Regards
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Read_DICOM failing on Example Siemens Data, MATLAB 2021b
Hello Medi Group! The problem can be solved changing the code accordingly as spince said. Regards
6/6/23
emelie....@gmail.com
,
Jacob Degitz
2
3/22/23
Problem with Read_Siemens_DICOM
Emelie, Are you still stuck on this issue? If so, try using "Read_DICOM" instead of "
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Problem with Read_Siemens_DICOM
Emelie, Are you still stuck on this issue? If so, try using "Read_DICOM" instead of "
3/22/23
Brooke Tornifoglio
3/13/23
nifti input files
Hi all, Just wondering if anyone has any experience using nifti files as an input format? I am
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nifti input files
Hi all, Just wondering if anyone has any experience using nifti files as an input format? I am
3/13/23
周
3/2/23
MEDI_TOOLBOX
Dear professor, I have some questions about using the medi toolbox you provided for multi-echo QSM
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MEDI_TOOLBOX
Dear professor, I have some questions about using the medi toolbox you provided for multi-echo QSM
3/2/23
Humberto M.
11/3/22
Vasculature artifacts?
Hello MEDI Experts, I processed my 3D multi-echo gradient echo sequence with flow compensation data
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Vasculature artifacts?
Hello MEDI Experts, I processed my 3D multi-echo gradient echo sequence with flow compensation data
11/3/22
Mona.Sal...@uksh.de
,
Alexey Dimov
2
9/29/22
How to run the matlab code for QSM
Hello Mona, Please follow code and comments in README.m file provided with the MEDI toolbox Regards,
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How to run the matlab code for QSM
Hello Mona, Please follow code and comments in README.m file provided with the MEDI toolbox Regards,
9/29/22
bhav...@gmail.com
,
drluk...@gmail.com
3
4/21/22
Susceptibility values
Dear MEDI_users, I'm just responding again to see if anyone has been able to look into this. Best
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Susceptibility values
Dear MEDI_users, I'm just responding again to see if anyone has been able to look into this. Best
4/21/22
Byumri Rf
3/21/22
Units of Fit_ppm_complex_TE()
Hi MEDI experts, Can you confirm the output units of Fit_ppm_complex_TE()? It looks to me that the
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Units of Fit_ppm_complex_TE()
Hi MEDI experts, Can you confirm the output units of Fit_ppm_complex_TE()? It looks to me that the
3/21/22
Josh Voltin
2
7/1/21
Zipper-like Artifact in processed QSM
On Thursday, July 1, 2021 at 11:34:34 AM UTC-4 Josh Voltin wrote: Hello all, I'm a research
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Zipper-like Artifact in processed QSM
On Thursday, July 1, 2021 at 11:34:34 AM UTC-4 Josh Voltin wrote: Hello all, I'm a research
7/1/21
jron...@gmail.com
,
calb...@gmail.com
4
6/3/21
Parameter optimisation on high-field MRI
Dear Jierong, I ran the MEDI_L1 code using a wide range of λ values and plot the L-curve using (x-
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Parameter optimisation on high-field MRI
Dear Jierong, I ran the MEDI_L1 code using a wide range of λ values and plot the L-curve using (x-
6/3/21
Francesca Rossi
4/24/21
Bone QSM
Dear all, I'm a PhD student interested in bone QSM. During my master thesis I performed QSM on
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Bone QSM
Dear all, I'm a PhD student interested in bone QSM. During my master thesis I performed QSM on
4/24/21
Silvia Siggillino
,
Alexey Dimov
3
4/21/21
Artifacts QSM
Dear Alexey, that's correct, data were acquired on Philips. I've followed your suggestion but
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Artifacts QSM
Dear Alexey, that's correct, data were acquired on Philips. I've followed your suggestion but
4/21/21
Silvia Siggillino
,
Alexey Dimov
3
4/1/21
range QSM output (Write_DICOM)
Dear Alexey, thank you very much for your help! I guess I was misled by the specification in the
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range QSM output (Write_DICOM)
Dear Alexey, thank you very much for your help! I guess I was misled by the specification in the
4/1/21
Ho Chi Joseph Lai
,
jron...@gmail.com
2
3/25/21
Can input data be in Matlab format?
Hi Joseph, That's in fact quite easy to implement - if you have the complex data in a matrix form
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Can input data be in Matlab format?
Hi Joseph, That's in fact quite easy to implement - if you have the complex data in a matrix form
3/25/21
Yi Wang
, …
jron...@gmail.com
3
2/26/21
Fwd: Asking for help about QSM
Hi Alexey, Thank you for the answer, it is really helpful. I'm working on a ultra-high-field
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Fwd: Asking for help about QSM
Hi Alexey, Thank you for the answer, it is really helpful. I'm working on a ultra-high-field
2/26/21
emelie....@gmail.com
,
spince...@gmail.com
3
2/23/21
Fit_ppm_complex
Dear Pascal, Thank you very much! Your explanation and the paper by Liu et al. will help me
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Fit_ppm_complex
Dear Pascal, Thank you very much! Your explanation and the paper by Liu et al. will help me
2/23/21
wy issac
,
Steffen Bollmann
2
11/11/20
Some stripe-like artifact
Dear Wy Issac, Is this data from a Magnetom 7T or a Terra 7T? The artifacts originate from phase-
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Some stripe-like artifact
Dear Wy Issac, Is this data from a Magnetom 7T or a Terra 7T? The artifacts originate from phase-
11/11/20
Zungho (Wesley) Zun
10/23/20
SWAN + QSM
Hi, We use GE scanners and are currently running SWAN sequence twice in each patient, one for
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SWAN + QSM
Hi, We use GE scanners and are currently running SWAN sequence twice in each patient, one for
10/23/20