I know of several places (LMAX included, per @mikeb01's comment) that run it in production in very latency sensitive environments. The fact that jHiccup (with a control jHiccup log) allows you to reconstruct a hiccup distribution for any time range in the past makes it a very useful triage tool for isolating or ruling out parts of the system as causes of experienced glitches (e.g. was it the system as a whole that glitched, the JVM that glitched, or the actual application code/network that showed delays?).
However, it's important to note that jHiccup will probably not directly provide you with what you say you are looking for below: It's not a means for measuring latency, it's a means for measuring the disruption of execution in your platform. As such it can tell you what the best possible latency behavior you would have had is (if all processing paths had no latency at all and only glitches observed at the JVM or system level caused latency). You can think of jHiccup as a "best case" latency indicator: It provides a good sanity check for other metrics, as anything reporting better latency distribution (i.e. lower magnitudes at given percentiles) than jHiccup reports likely has a measurement problem. It is also good triage tool (figure out if latency behavior is caused/dominated by hiccups or by you code or network) and overall monitoring tool (see if your system or JVM is glitching, rather than wait for those glitches to hit you hard with actual transactions).
If what you want to do is analyze the latency on market data delivery sources, you can use HdrHistogram to record those latencies in much the way jHiccup uses it to record observed "time to do nothing" latencies. since jHiccup is ~700 lines of code (half of which is a big comment and argument parsing code), it serves as a good, simple example of how to do latency recording using HdrHistogram. You can record and produce similar histogram logs for your market data latencies, and plot them with the same tools and format as jHiccup uses to depict latency distribution by percentile and over time.