[ANN] Release of NGLView for interactive trajectory visualization in Jupyter notebooks.

[Hai Nguyen]

Dear MDAnalysis users,

 

 

The NGLView developers are very excited to announce the release of a new  NGLView version (v0.5.1) for interactive trajectory visualization in Jupyter notebooks.

 

Documentation: http://arose.github.io/nglview/latest/index.html

 

 

Why NGLView?

 

NGLView gives you quick access to the trajectories you are analyzing inside of Jupyter notebooks (http://jupyter.org/).

 

 

Highlights:

 

* Supports various file formats (.nc, .dcd, .pdb, .mol2, …), including density volumes (MRC/MAP/CCP4, DX/DXBIN, CUBE)

* Uses MDAnalysis as one of NGLView’s backends for trajectory loading

* Uses  WebGL for GPU supported rendering

* User interaction (mouse picking, selection language, image export)

* Supports remote visualization via SSH port forwarding

* Scalability: works well for 100-200K atom system

* Convenient atom selection language

* High resolution screenshots

 

Installation:

conda install nglview -c bioconda

 

Try NGLView online:
http://mybinder.org/repo/hainm/nglview-notebooks

Questions?

 

Feel free to ask questions and make suggestions on github:

https://github.com/arose/nglview/issues

 

 

PS: I (Hai) posted a similar post to AMBER list.

 

Cheers

The NGLView developers

[Max Linke]

Hi Hai

The bioconda channel doesn't work yet. Mainly the package hasn't been
updated yet. I'll try again in the next few days.

best Max

On 06/14/2016 08:13 PM, Hai Nguyen wrote:
> Dear MDAnalysis users,
>
>
> The NGLView developers are very excited to announce the release of a
> new NGLView version (v0.5.1) for interactive trajectory visualization
> in Jupyter notebooks.
>

> *Documentation*: http://arose.github.io/nglview/latest/index.html
>
>
> *Why NGLView?*

>
> NGLView gives you quick access to the trajectories you are analyzing
> inside of Jupyter notebooks (http://jupyter.org/).
>
>

> *Highlights:*

>
> * Supports various file formats (.nc, .dcd, .pdb, .mol2, …), including
> density volumes (MRC/MAP/CCP4, DX/DXBIN, CUBE)
> * Uses MDAnalysis as one of NGLView’s backends for trajectory loading

> <https://github.com/arose/nglview/blob/master/examples/mdanalysis.md>

> * Uses WebGL for GPU supported rendering
> * User interaction (mouse picking, selection language, image export)
> * Supports remote visualization via SSH port forwarding
> * Scalability: works well for 100-200K atom system
> * Convenient atom selection language
> * High resolution screenshots
>

> *Installation:*

>
> conda install nglview -c bioconda
>

> *Try NGLView online:
> *http://mybinder.org/repo/hainm/nglview-notebooks*<http://mybinder.org/repo/hainm/nglview-notebooks>
> *
> *Questions?*

>
> Feel free to ask questions and make suggestions on github:
> https://github.com/arose/nglview/issues
>
>
> PS: I (Hai) posted a similar post to AMBER list.
>
> Cheers
> The NGLView developers
>

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[Hai Nguyen]

thanks. I did not realize that. I tested locally and seems that conda reused my local file.

conda install nglview -c ambermd

should works now. cheers.

Hai

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