Sub: Requesting guidance on “Transport property calculations” project
aakash balu
Dear mentors,
I hope this message finds you well. I am Aakash B, a 3rd year Undergraduate student pursuing Biological Sciences at the Indian Institute of Technology Madras(IIT Madras). I’m interested in the project titled “Transport property calculations” under MD Analysis. I would like you to provide some guidance on getting started with the project proposal.
Following is a short description of my related works:
I have experience using Python and its libraries: numpy, pandas, matplotlib, seaborn, tensorflow, scikit learn, PyTorch.
As a part of my internship at Geneterprter during the summer of 2022 as research associate, I curated, cleaned and mapped cancer patient’s information data with microarray/rnaseq data and ran them through different gene set variation algorithms.
As a part of my curriculum I completed these following courses successfully and explored these domains.
Biochemistry : Chemistry of biomolecules, Enzyme kinetics, Bioenergetics
Fundamentals of biophysical chemistry: Molecular rotations and vibrations, optical spectroscopy, statistical thermodynamics, Structural and quantitative techniques.
Biochemical Thermodynamics: Equations of state and departure functions, Thermodynamics of multi component mixture, phase equilibria.
Introduction to biological physics: Entropic forces in cell, Biological application of diffusion, Fick’s law, chemical kinetics and enzymes, differential equation models.
Structural Biology: Basic principles of biomolecular structure, ramachandran plot, methods for determination and analysis of biomolecular structure.
Bioinformatics: linux commands, alignments, determination of protein structure, statistical methods, genome database and analysis.
Data science theory and practice: Python programing, optimization, Machine Learning.
Looking forward to hearing from you. Thank you in advance for your time and consideration.
Sincerely,
Aakash B,
Biological Sciences,
IIT Madras.
Oliver Beckstein
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