Hi Mostafa.
Here is a link how to make a good bug-report.
http://www.chiark.greenend.org.uk/~sgtatham/bugs.html
It is close to impossible to help you with the information you provide.
Could you maybe provide some of the following in the terminal
1) > uname -a
2) > cat /etc/redhat-release
3) > which python
4) > python -V
5) > echo $PYTHONPATH
6) > echo $LD_LIBRARY_PATH
I think your problem is already partly answered on the mailing list.
https://groups.google.com/forum/#!searchin/mddnmr/epd/mddnmr/gXHy3QeVjfM/wmw--i1xXKMJ
For example.
Let's say i want to run qMDD on our RHEL 5 server: biocfile1
We have just extracted the enthought EPD package to a separate folder
on our server, not
modifying any host files or system files.
See what happens:
**************************************************************************************************************************************
tlinnet@linmac:Desktop$ ssh -X biocfile1
Last login: Tue Apr 15 21:07:47 2014 from
vpn-bio.science.ku.dk
[tlinnet@biocfile1 ~]$ which qMDD22
/sbinlab2/software/x64/bin/qMDD22
[tlinnet@biocfile1 ~]$ cat /sbinlab2/software/x64/bin/qMDD22
#!/bin/tcsh
#############Check at set correct PATHS
unsetenv PYTHONPATH
unsetenv LD_LIBRARY_PATH
setenv MDD_NMR /sbinlab2/software/mddnmr2.2
setenv MDD_NMRbin ${MDD_NMR}/binLinux64
set path=( $path $MDD_NMRbin ${MDD_NMR}/com )
#NmrMpipe
if (-e /sbinlab2/software/nmrPipe/com/
nmrInit.linux9.com) then
setenv NMR_CONT CORRECT_ALL
source /sbinlab2/software/nmrPipe/com/
nmrInit.linux9.com
endif
if( ! $?MDDTHREADS && $HOST == "haddock" ) set MDDTHREADS=23
###########################
set gui=1
set i=0
foreach a ($argv)
@ i+=1
if ( $a == 'nogui' ) then
set gui=0
set argv[$i]=''
endif
end
if ( `uname` == 'Linux' ) then
set style='cleanlooks'
else
set style=''
endif
if ( $gui == 1 ) then
set prog=$MDD_NMR/GUI/qMDDGUI.py
/usr/bin/env /sbinlab2/software/epd/bin/python $prog $*:q -style $style &
else
set prog=$MDD_NMR/GUI/qMDD.py
/usr/bin/env /sbinlab2/software/epd/bin/python $prog $*:q
endif
[tlinnet@biocfile1 ~]$ /sbinlab2/software/epd/bin/python
Enthought Python Distribution --
www.enthought.com
Version: 7.3-2 (64-bit)
Python 2.7.3 |EPD 7.3-2 (64-bit)| (default, Apr 11 2012, 17:52:16)
[GCC 4.1.2 20080704 (Red Hat 4.1.2-44)] on linux2
Type "credits", "demo" or "enthought" for more information.
>>> import PySide
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/sbinlab2/software/x64/lib64/python2.6/site-packages/PySide/__init__.py",
line 2, in <module>
import private
File "/sbinlab2/software/x64/lib64/python2.6/site-packages/PySide/private.py",
line 2, in <module>
from QtCore import __moduleShutdown
ImportError: /sbinlab2/software/x64/lib64/python2.6/site-packages/PySide/QtCore.so:
ELF file OS ABI invalid
>>>
[tlinnet@biocfile1 ~]$ echo $PYTHONPATH
/sbinlab2/software/CCP4-Linux_6.3.0/ccp4-6.3.0/share/python:.:/sbinlab2/software/x64/haddock2.1:/sbinlab2/software/x64/lib64/python2.6/site-packages:/sbinlab2/software/x64/ccpnmr/ccpnmr2.3/python
[tlinnet@biocfile1 ~]$ echo $LD_LIBRARY_PATH
/sbinlab2/software/CCP4-Linux_6.3.0/ccp4-6.3.0/lib:/usr/lib64:/sbinlab2/software/x64/gromacs/lib:/sbinlab2/software/nmrPipe/nmrbin.linux9/lib:/sbinlab2/software/x64/lib
[tlinnet@biocfile1 ~]$ unsetenv PYTHONPATH
[tlinnet@biocfile1 ~]$ unsetenv LD_LIBRARY_PATH
[tlinnet@biocfile1 ~]$ /sbinlab2/software/epd/bin/python
Enthought Python Distribution --
www.enthought.com
Version: 7.3-2 (64-bit)
Python 2.7.3 |EPD 7.3-2 (64-bit)| (default, Apr 11 2012, 17:52:16)
[GCC 4.1.2 20080704 (Red Hat 4.1.2-44)] on linux2
Type "credits", "demo" or "enthought" for more information.
>>> import PySide
**************************************************************************************************************************************
So, you have either one of the problems
1) You have 64 bit software installed on a 32 bit machine
2) Your PYTHONPATH and LD_LIBRARY_PATH has been modified somewhere.
unset them, and just execute the python from the EPD directory.
If you have further problems, try reading this link how to make a good
bug-report.
http://www.chiark.greenend.org.uk/~sgtatham/bugs.html
It is close to impossible to help you with the information you provide now. :-)
Best
Troels
Troels Emtekær Linnet
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