The raft being a solid plate, never heard of that. The raft is actually some kind of algorithm with a wide degree of customization. This is done in the slicing profile. I am using an edited Replicator 2 profile. To do this in ReplicatorG, go to GCode/Edit Slicing Profiles. The top one should be Replicator 2. Hit edit and another panel will come up. This panel is explained step by step in the ReplicatorG documentation but it can be challenging. Click on the Craft tab, look at all the buttons and there will be one labeled Raft. This is where the Raft can be fine tuned. This is the documentation on the Makerbot site. It is for an earlier version than ReplicatorG40 but the description of the Raft setting is mostly the same:
Also, make sure the profile is saved or it will seem like the settings didn't "take". My experience is closing out of this causes ReplicatorG to lock up. I just go to the Task Manager, shut it down, then restart, sometimes needing a reboot. Then, when Generate Gcode is started, in the panel that pops up, the top little line should say Replicator2, which is the profile just edited. Below is a line called Print-o-matic and that should be checked. That tells the Gcode generator to use this profile setting.
I have found out the ReplicatorG/Skeinforge default is to turn Skirt off. Skirt is basically a line that goes around the base of your part. It helps in many ways, first, to show a boundary around your part build area. It also helps to keep parts down and it helps getting parts off the table. The other setting I found is set to off by default is the Preview analysis. This will show your part layer by layer and there is some way to animate it, haven't messed around with that yet.
A lot of people are searching for other software, which is out there, but the point of the new software is make it easier for the user with more settings made automatic. This can mean it is good generally but poor at handling special conditions. On the Makerbot forums, the more pro level guys prefer ReplicatorG/Skeinforge over Makerware because of the wide range of customization. Hope this helps.