The -webkit-column-count CSS attribute has been buggy in the past (see
https://github.com/mathjax/MathJax/issues/45 for example). The test case that I had for it was resolved in one of the WebKit upgrades, but it looks like it is still buggy. Both Safari and Chrome are based on WebKit, which is why are seeing the problem there.
I will look into it, but I suspect there is not much that MathJax can do about it. I was not able to find a work-around for the issue in the tracker item above, so I doubt I can find one for the current incarnation of the problem. But I'll check into it.
Davide