Hi,
Have you added the the MapStruct JAR and the FreeMarker JAR from the distribution (
http://sourceforge.net/projects/mapstruct/files/) to your factory path (In Eclipse settings that's under Java Compiler -> Annotation Processing -> Factory Path)? Also your Eclipse project must use language level 1.6 or later. If it still doesn't work, you may check in the Error Log (Window -> Show View -> Error Log) whether anything shows up.
Note that this will automatically be configured for you if you have configured MapStruct via Maven and import your project into Eclipse (the M2E plug-in then will set up factory path etc. for you).
I will add a how-to for the Eclipse set-up if I find a minute.
Hth,
--Gunnar