How to convert my first column to the row names
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koushik ayaluri
Feb 25, 2020, 7:01:56 PM2/25/20
to manipulatr
I have a gene expression dataset
> View (p53genes)|
|
Gene symbol |
WT1 |
WT2 |
WT3 |
MUT1 |
MUT2 |
|
1 |
NAT2 |
2.707238 |
2.960215 |
3.554969 |
2.219525 |
3.812129 |
|
2 |
NAT2 |
7.861489 |
7.128331 |
7.190403 |
7.481062 |
8.034329 |
|
3 |
ADA |
6.624238 |
4.828936 |
6.467866 |
6.430245 |
2.221382 |
|
4 |
CDH2 |
6.676011 |
6.015457 |
6.293267 |
6.649966 |
4.123641 |
|
5 |
CDH2 |
4.508974 |
6.093028 |
5.223152 |
4.579542 |
6.144728 |
when I do
>p53genes2 <- rownames(p53genes)
I am getting "1" "2" "3" "4" as my rownames
So I did
rownames(p53genes) <- p53genes[,1]Error: duplicate 'row.names' are not allowed
So how can I take my rownames as my genesymbols and not the numerics 1,2,3?
Thank you in advance for your responses.
Patrick Kilduff
Feb 25, 2020, 10:20:40 PM2/25/20
to koushik ayaluri, manipulatr
Hi Koushik,
What does:
> p53genes[,1]
return?
Thank you,
Patrick
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mohammed imran Khan
May 12, 2020, 11:29:21 PM5/12/20
to manipulatr
Hi, I am having same issue. Did you find the solution yet? my raws and columns names are numerical by default.
Thank you
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