http://makergear.wikidot.com/m2-electronics1. The HBP thermistor goes to T2.
2. The EXT thermistor goes to T0.
3. Yes, the 4 wire EXT(ruder) connector goes to E0. If the extruder rotates the wrong direction when command to manually move (extrude should be clockwise, retract should be counterclockwise), power down, unplug power and flip the connector.
4. On the 1x6 connector, the marked wire goes towards the near edge of the board. On the 2x4 connector, the side with two wires goes towards the main chip.
5. The electronics case fan is combined with the filament driver/extruder fan on Extruder 1 Fan. The link above has information on how to control it manually, if you so wish.