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The missing perimeter issues seemed to get worse using the default profile as increased the feed rate to 80mm/ using acceleration. I haven't upgraded to 5.5 yet as my HBP's connector had turned dark brown due to the HBP wiring issue (which has been discussed on these forums) and have been afraid to even power it on since. A replacement wire harness is in the mail and I should receive it shortly.
There were some other issues with the accuracy of the print (rounded, smoothed out fine details which is expected at high feed rates) at higher speeds when I first installed the 5.4 firmware however, I wasn't able to narrow down the cause. Reducing the print speed to 60mm/s brought back enough accuracy along with raising the nozzle temp to 240C (for ABS) along with ensuring the machine was properly lubricated. I'm not convinced this is a problem so much as the expected behaviour when increasing print speeds.