Well, let me welcome you to the world of MakerBot and the 3D printing enthusiasts at large.
Now, for the less than good news. There have been some problem with the smart extruder. Many folks have had to contact support and get replacement extruders.
Part 2 is that do not use the ticket system or email with MakerBot support. For whatever reason, that seems be be continuously a long wait for anyone who uses that method. MakerBot has set up extensive and very helpful phone support. The number is on the card you received with your printer.
So basically ALWAYS CALL support.
Part 3, is that because of the above 2 factors, a LOT of folks have been less than happy with the 5th gen overall. If you were to judge from comments in this forum, nearly everyone has a problem and mostly sooner rather than later with this machine.
Part 4, Makerbot has made some revisions to the smart extruder. Most notably, there is a difference in the fin count of the aluminum fins inside the smart extruder. The older version has 4 fins, the new one has 6 and there may be even another 3rd variant reported recently.
So I would personally identify which version you have and possible post a picture.
Part 5, some folks are using "oiling the filament" methods to kind of work around the issue. I personally don't think that is a good fix, but hey, the idea is to get you printing, not complaining about not printing.
That said, I wouldn't feel honest if I didn't tell you you only have about 14 days or less to make an inportant decision- return or keep the machine.
That should loom in the back of your head. Only you can if you think it's going to improve to a point you will be happy or if you are going to have problems.
Hint, a few folks have made it known they returned their machines. Adding to the mix is the fact MakerBot just discontinued the Replicator-2, because it was "more reliable" and was cutting into sales. Most folks generally wen to a Replicator 2 when they returned the 5th gen.
Again, I think it's only fair to make you aware of such topics up front.